Hg_chrom6_TN10mRNA_12208
Organism: Heterodera glycines Gene Locus: chr6:5792418-5799665 Feature type: polypeptideProtein Sequence
Length: 1,516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.821 | 0.966 | 0.66 | 0.432 | 1.187 | 1.049 | 1.013 | 1.088 | 0.894 | 1.043 | 0.69 | 1.358 | 0.989 | 1.129 | 1.44 | 1.555 | 1.125 | 0.79 | 1.319 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PKPS,KRRQYTFNFMDMSTHKRTR,RRQYTFNFMDMSTHKRTRI
|
57-77
|
0.987
|
67-94
|
0.993
|
— | — |
0.000
|
— | — |
0.141
|
0.054
|
0.013
|
0.253
|
0.210
|
0.408
|
0.303
|
0.029
|
0.770
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010575
|
1.000
|
1.000
|
Hsc_gene_7200.t1
|
Hsc_gene_7200.t1
|
— |
Q10656.1 Myoblast growth factor receptor egl-15 [Caenorhabditis elegans]
|
KAI6188717.1 TK/FGFR protein kinase [Aphelenchoides besseyi];KAI6201943.1 TK/FGFR protein kinase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0005524|GO:0006468
|
GO:0008150_0.989|GO:0065007_0.954|GO:0009987_0.946|GO:0050789_0.943|GO:0050794_0.932|GO:0032502_0.847|GO:0048856_0.847|GO:0050896_0.805|GO:0003674_0.782|GO:0032501_0.780|GO:0051716_0.779|GO:0005575_0.742|GO:0023052_0.740|GO:0007154_0.739|GO:0110165_0.736|GO:0007165_0.724|GO:0030154_0.707|GO:0048869_0.707|GO:0007275_0.703|GO:0048731_0.697|GO:0003824_0.694|GO:0140096_0.694|GO:0016740_0.661|GO:0048518_0.652|GO:0007166_0.648|GO:0048522_0.636|GO:0016772_0.629|GO:0016773_0.621|GO:0004672_0.617|GO:0016301_0.617|GO:0048513_0.603|GO:0071944_0.597|GO:0016020_0.593|GO:0005886_0.591|GO:0005488_0.590|GO:0005515_0.584|GO:0005622_0.561|GO:0009719_0.552|GO:0050793_0.552|GO:0007167_0.542|GO:0009653_0.531|GO:0071495_0.524|GO:0007169_0.519|GO:0008152_0.518|GO:0071840_0.517|GO:0070848_0.510|GO:0016043_0.509|GO:0048468_0.508|GO:0071363_0.505|GO:0048583_0.502
|
IPR000719+775-1109+|IPR001245+776-1105+|IPR003598+101-169_418-487_518-607+|IPR003599+95-180_412-498_512-618+|IPR007110+88-178_402-496_509-616+|IPR008266+971-983+|IPR011009+761-1115+|IPR013098+88-179_412-496_513-617+|IPR013783+82-181_398-500_501-620+|IPR017441+781-811+|IPR020635+775-1106+|IPR036179+87-179_412-499_505-617+|IPR050122+52-1107+
|
SM00219+775-1106+|SM00408+101-169_418-487_518-607+|SM00409+95-180_412-498_512-618+
|
PF07679+88-179_412-496_513-617+Immunoglobulin_I-set_domain|PF07714+776-1105+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:2.60.40.10:FF:001641+82-181_395-499+Myoblast_growth_factor_receptor_egl-15|G3DSA:2.60.40.10:FF:001689+500-621+Myoblast_growth_factor_receptor_egl-15
|
PTHR24416+52-1107+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
249-400;712-765;873-939;1121-1516
|
4.000
|
1-248;401-711;766-872;940-1120
|
9cd7_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
166860.370
|
8.617
|
29.500
|
24.538
|
9.697
|
50.528
|
49.472
|
13.786
|
10.752
|
53.430
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1900.021
|
677.580
|
2007.939
|
2498.452
|
2750.366
|
4424.635
|
1098.270
|
1803.165
|
75.643
|
2533.208
|
1479.966
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.338
|
1.746
|
0.424
|
0.106
|
0.701
|
-2.001
|
-1.402
|
-0.572
|
-5.185
|
5.239
|
— | — | — |
No JSON data available for plots.