SCN Proteipedia

Hg_chrom6_TN10mRNA_12213

Organism: Heterodera glycines Gene Locus: chr6:5813343-5817637 Feature type: polypeptide

Protein Sequence

Length: 1,043

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.714	1.516	0.784	0.562	1.119	1.45	0.776	1.534	0.916	0.972	0.552	1.41	0.692	1.198	1.565	1.233	1.147	0.901	1.106	0.79	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11511	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.436

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRQQRITAEEQKKRET	—	—	45-66	0.923	—	—	0.019	—	—	0.124	0.024	0.009	0.271	0.220	0.377	0.304	0.046	0.834	0.087

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010578	1.000	1.000	Hsc_gene_7195.t1	Hsc_gene_7195.t1	—	G5EBF1.1 Protein sax-3 [Caenorhabditis elegans]	KAI1732012.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.910\|GO:0005575_0.893\|GO:0110165_0.893\|GO:0009987_0.867\|GO:0016020_0.757\|GO:0032501_0.750\|GO:0065007_0.735\|GO:0071944_0.730\|GO:0005886_0.721\|GO:0050789_0.714\|GO:0032502_0.712\|GO:0048856_0.712\|GO:0007275_0.685\|GO:0016043_0.684\|GO:0071840_0.684\|GO:0050794_0.669\|GO:0048731_0.661\|GO:0003674_0.653\|GO:0007399_0.638\|GO:0048869_0.588\|GO:0030154_0.582\|GO:0050896_0.581\|GO:0022008_0.566\|GO:0009653_0.564\|GO:0048468_0.560\|GO:0030182_0.548\|GO:0048699_0.548\|GO:0048666_0.516\|GO:0030030_0.508\|GO:0120036_0.508\|GO:0031175_0.502	IPR003598+49-116+\|IPR003599+41-127+\|IPR003961+146-229_146-238_147-236_148-243_272-354_274-367_278-361_278-364_370-454_372-454_372-456_372-468+\|IPR007110+34-125+\|IPR013783+31-135_139-245_258-362_363-468+\|IPR036116+144-242_278-456+\|IPR036179+32-124+	SM00060+146-229_272-354_370-454+\|SM00408+49-116+\|SM00409+41-127+	PF00041+147-236_278-361_372-454+Fibronectin_type_III_domain\|PF13927+34-113+Immunoglobulin_domain	G3DSA:2.60.40.10:FF:000008+32-128+roundabout_homolog_2_isoform_X2\|G3DSA:2.60.40.10:FF:000028+365-465+Neuronal_cell_adhesion_molecule	PTHR44170+30-125+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	122-166;567-1043	2.000	1-121;167-566	5noi_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.862	116987.780	7.889	19.000	25.407	9.684	53.212	46.788	14.382	11.026	52.924

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	tan	1504.812	2288.009	1698.681	1465.733	1577.949	1781.821	1962.406	1526.221	1728.841	674.114	1126.139

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.658	-0.780	—	—	—	—	-0.330	0.505	—	—	—	—	—

No JSON data available for plots.

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