Hg_chrom6_TN10mRNA_12215
Organism: Heterodera glycines Gene Locus: chr6:5827303-5831364 Feature type: polypeptideProtein Sequence
Length: 611
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.952 | 1.28 | 0.677 | 1.064 | 1.343 | 0.623 | 1.555 | 0.873 | 1.15 | 0.918 | 1.637 | 1.455 | 1.322 | 1.536 | 0.701 | 0.805 | 0.719 | 0.629 | 1.011 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11513
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.452
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
12-32
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.162
|
0.071
|
0.005
|
0.240
|
0.385
|
0.256
|
0.919
|
0.051
|
0.149
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010580
|
1.000
|
1.000
|
Hsc_gene_7193.t1
|
Hsc_gene_7193.t1
|
— |
Q9XTW2.1 Extracellular serine/threonine protein kinase CeFam20 [Caenorhabditis elegans]
|
KAH7732197.1 Protein FAM20C precursor [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.849|GO:0110165_0.848|GO:0016020_0.775|GO:0043226_0.706|GO:0005622_0.690|GO:0043227_0.665|GO:0071944_0.656|GO:0008150_0.647|GO:0005886_0.641|GO:0043229_0.614|GO:0005737_0.609|GO:0009987_0.593|GO:0003674_0.580|GO:0043231_0.577
|
IPR009581+292-508+|IPR024869+123-519+
|
— |
PF06702+292-508+Golgi_casein_kinase,_C-terminal,_Fam20
|
— |
PTHR12450+123-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-114;512-611
|
2.000
|
1-70;115-511
|
5yh2_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
70175.700
|
7.666
|
10.500
|
30.115
|
12.602
|
49.264
|
50.736
|
16.694
|
13.421
|
46.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
5960.920
|
2995.948
|
6207.570
|
3772.393
|
2727.685
|
3704.263
|
3214.979
|
3535.586
|
14504.960
|
5390.895
|
9296.923
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
0.195
|
-0.611
|
-0.500
|
0.456
|
-0.196
|
— | — | — |
-1.773
|
— | — | — |
No JSON data available for plots.