SCN Proteipedia

Hg_chrom6_TN10mRNA_12217

Organism: Heterodera glycines Gene Locus: chr6:5840504-5843417 Feature type: polypeptide

Protein Sequence

Length: 485

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.791	1.055	1.162	0.711	1.065	0.74	0.785	1.753	1.375	0.892	0.625	1.455	1.375	0.912	1.136	0.972	1.014	1.218	0.634	1.273	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11515	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	2-35	0.996	—	—	—	—	0.003	—	—	0.437	0.278	0.053	0.654	0.174	0.166	0.206	0.046	0.141	0.184

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000899	4.000	2.000	Hsc_gene_20119.t1;Hsc_gene_6508.t1	Hsc_gene_20119.t1;Hsc_gene_7188.t1;Hsc_gene_7189.t1;Hsc_gene_7191.t1;Hsc_gene_7192.t1	C44B11.3	P91910.1 Tubulin alpha-3 chain [Caenorhabditis elegans]	KAF7639627.1 Tubulin alpha chain [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.862\|GO:0110165_0.862\|GO:0005622_0.734\|GO:0008150_0.674\|GO:0043226_0.623\|GO:0009987_0.586\|GO:0043229_0.578\|GO:0016020_0.577	IPR000217+38-474_47-67_88-107_130-141_143-167_169-187_188-209_213-226_227-247_415-443+\|IPR002452+55-70_80-93_123-136_155-163_183-195_196-207_249-261_309-324_356-377_382-395_395-414_420-436_457-473+\|IPR003008+40-248_84-281+\|IPR008280+281-470+\|IPR017975+177-183+\|IPR018316+283-428_298-427+\|IPR023123+419-470+\|IPR036525+38-279_38-303+\|IPR037103+304-418+	SM00864+84-281+\|SM00865+283-428+	PF00091+40-248+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+298-427+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000005+419-484+Tubulin_alpha_chain\|G3DSA:3.30.1330.20:FF:000001+304-418+Tubulin_alpha_chain\|G3DSA:3.40.50.1440:FF:000019+38-303+Tubulin_alpha_chain	PTHR11588+38-474+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	477-485	1.000	1-476	8yal_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.497	54507.620	5.817	-6.500	25.979	13.608	46.392	53.608	13.196	12.784	52.165

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	greenyellow	348.497	143.046	201.564	211.885	230.430	165.821	569.921	516.576	121.180	669.071	434.261

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.265	0.429	—	—	-0.460	1.793	1.534	0.285	-2.587	—	—	—	—

No JSON data available for plots.

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