Hg_chrom6_TN10mRNA_12218
Organism: Heterodera glycines Gene Locus: chr6:5844352-5845224 Feature type: polypeptideProtein Sequence
Length: 129
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.442 | 0.705 | 0.535 | 0.646 | 0.795 | 1.107 | 0.775 | 1.034 | 0.838 | 2.114 | 0.456 | 1.292 | 0.894 | 2.057 | 0.775 | 0.635 | 1.175 | 1.193 | 0.228 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11516
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKHRQEQRWNDKRYKKT,KPKGIRTARKLKKHRQEQRWNDKRYKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.616
|
0.264
|
0.177
|
0.425
|
0.409
|
0.090
|
0.086
|
0.001
|
0.116
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010581
|
1.000
|
1.000
|
Hsc_gene_7190.t1
|
— | — |
Q19877.1 Small ribosomal subunit protein uS12 [Caenorhabditis elegans]
|
KAI1725527.1 ribosomal protein s12/S23 domain-containing protein [Ditylenchus destructor];KAI1732019.1 ribosomal protein s12/S23 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015935
|
GO:0005575_0.932|GO:0110165_0.925|GO:0005622_0.809|GO:0043226_0.800|GO:0043229_0.779|GO:0005737_0.668|GO:0043228_0.588|GO:0043232_0.585|GO:0016020_0.564|GO:0003674_0.513|GO:0005840_0.508
|
IPR005680+26-126+|IPR006032+6-129_44-128_46-53+|IPR012340+11-129_20-127+
|
— |
PF00164+44-128+Ribosomal_protein_S12/S23
|
G3DSA:2.40.50.140:FF:000007+25-129+40S_ribosomal_protein_S23
|
PTHR11652+6-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-129
|
9cai_AX
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
14558.960
|
11.605
|
22.000
|
33.333
|
8.527
|
51.938
|
48.062
|
25.581
|
7.752
|
48.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
7397.226
|
2545.280
|
5211.110
|
10026.968
|
10224.540
|
7688.890
|
4594.539
|
2645.201
|
3057.187
|
13968.776
|
9292.381
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
1.841
|
1.052
|
— |
-0.396
|
-0.732
|
-1.648
|
0.941
|
-2.302
|
1.871
|
— | — | — |
No JSON data available for plots.