SCN Proteipedia

Hg_chrom6_TN10mRNA_12219

Organism: Heterodera glycines Gene Locus: chr6:5845887-5847590 Feature type: polypeptide

Protein Sequence

Length: 448

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	1.09	1.218	0.77	1.153	0.744	0.85	1.562	1.29	0.905	0.575	1.444	1.178	0.944	1.002	0.925	0.988	1.285	0.687	1.247	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11517	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	21-pJ2_J3	0.961

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.426	0.295	0.088	0.695	0.094	0.215	0.164	0.116	0.214	0.097

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000899	4.000	2.000	Hsc_gene_20119.t1;Hsc_gene_6508.t1	Hsc_gene_20119.t1;Hsc_gene_7188.t1;Hsc_gene_7189.t1;Hsc_gene_7191.t1;Hsc_gene_7192.t1	C44B11.3	P91910.1 Tubulin alpha-3 chain [Caenorhabditis elegans]	KAF7639627.1 Tubulin alpha chain [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005200\|GO:0005525\|GO:0005874\|GO:0007017	GO:0005575_0.860\|GO:0110165_0.860\|GO:0005622_0.732\|GO:0008150_0.671\|GO:0043226_0.615\|GO:0009987_0.583\|GO:0016020_0.571\|GO:0043229_0.571	IPR000217+1-437_10-30_51-70_93-104_106-130_132-150_151-172_176-189_190-210_378-406+\|IPR002452+18-33_43-56_86-99_118-126_146-158_159-170_212-224_272-287_319-340_345-358_358-377_383-399_420-436+\|IPR003008+3-211_47-244+\|IPR008280+244-433+\|IPR017975+140-146+\|IPR018316+246-391_261-390+\|IPR023123+382-434+\|IPR036525+1-242_1-266+\|IPR037103+267-381+	SM00864+47-244+\|SM00865+246-391+	PF00091+3-211+Tubulin/FtsZ_family,_GTPase_domain\|PF03953+261-390+Tubulin_C-terminal_domain	G3DSA:1.10.287.600:FF:000005+382-447+Tubulin_alpha_chain\|G3DSA:3.30.1330.20:FF:000001+267-381+Tubulin_alpha_chain\|G3DSA:3.40.50.1440:FF:000019+1-266+Tubulin_alpha_chain	PTHR11588+1-437+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	446-448	1.000	1-445	8yal_E	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.614	49853.150	4.817	-15.000	25.446	12.500	45.536	54.464	11.830	13.616	54.018

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	purple	513.188	324.615	275.518	628.397	737.441	367.034	548.067	547.549	118.379	870.682	548.267

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.468	0.816	1.300	0.198	-0.991	0.588	0.469	—	-2.984	—	—	—	—

No JSON data available for plots.

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