Hg_chrom6_TN10mRNA_12220
Organism: Heterodera glycines Gene Locus: chr6:5847892-5852039 Feature type: polypeptideProtein Sequence
Length: 1,183
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 0.511 | 0.446 | 0.525 | 4.41 | 0.802 | 0.533 | 0.465 | 0.319 | 0.354 | 2.613 | 1.989 | 0.564 | 0.65 | 2.519 | 0.676 | 0.568 | 0.295 | 0.325 | 0.075 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11518
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RKRR,KSEGRKGKRRVPKRGR,KRRKAEEEKTEEKKPKE,KRRKVEEEKPEEKKPKE,RRRKAEEEKPEEKKPKE,KRRKAEEEKPEEKRQKE,KRRKAEEEKPEEKKPKE,RRNEEKKRKKAEEKKRLD,KRRKAEEEKPEEKKRKEA,KKRKEAEEEKPEEKRQKE,RRRKAEEEKLEEKKRKEA,RREEERRKDEEEKRRKAKE,KRRKAKEEVKKPEEKRQKE,KRKKAEEKKRTMNEEHKKR,RKKAEEKKRTMNEEHKKRM,KKAEEKKRTMNEEHKKRMD,KRRKETEEQRRNEEKKRKK,RRKETEEQRRNEEKKRKKA,RKETEEQRRNEEKKRKKAE,KKRKKAEEKKRLDEEEKRR,KRKKAEEKKRLDEEEKRRM,RKKAEEKKRLDEEEKRRMD,KKRLDEEEKRRMDGEEKRR,KRLDEEEKRRMDGEEKRRK,KRQKEAEEEKRIEEQEKRR,KRQKETEEKKRMEEEEKRR,KRKEAGEEKRTMNEEHKKR,RKEAGEEKRTMNEEHKKRM,KRTMNEEHKKRMDGEEKRR,KRRKAEEEKPEEKKRKKAE,KKRKKAEEKKRMDEEERRR,KRKKAEEKKRMDEEERRRK,RKKAEEKKRMDEEERRRKA,KKAEEKKRMDEEERRRKAE,KKRMDEEERRRKAEEKKPK,KRMDEEERRRKAEEKKPKE,KKPKEAEEEKRMEEEEKRR,KRMEEEEKRRMDGEEKRRK,KRRKEVEEEKQKDEEERRR,RRKEVEEEKQKDEEERRRK,RKEVEEEKQKDEEERRRKA,KRQKETEEKKREEKRRKEA,KRRKEAEEEKRMDEEERRR,RRKEAEEEKRMDEEERRRK,RKEAEEEKRMDEEERRRKA,KKRKEAEEEKPEEKRRKTE
|
— | — |
66-86
|
0.995
|
1-30
|
0.826
|
0.583
|
1.000
|
1.000
|
0.268
|
0.046
|
0.015
|
0.334
|
0.236
|
0.122
|
0.125
|
0.060
|
0.663
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010582
|
1.000
|
1.000
|
Hsc_gene_7187.t1
|
— | — | — |
KAI1725528.1 hypothetical protein DdX_02188 [Ditylenchus destructor]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR052098+739-1154+
|
— | — | — |
PTHR14113+739-1154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
117-1032;1070-1183
|
2.000
|
1-116;1033-1069
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
142325.760
|
8.272
|
13.500
|
59.425
|
3.635
|
72.950
|
27.050
|
30.516
|
28.910
|
29.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1457.188
|
1156.743
|
2320.864
|
1173.304
|
629.188
|
799.033
|
297.115
|
2277.257
|
352.429
|
2865.812
|
1788.648
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
— |
-0.874
|
-0.930
|
0.359
|
-1.417
|
1.415
|
-2.799
|
-3.150
|
— | — | — |
3.499
|