Hg_chrom6_TN10mRNA_12225
Organism: Heterodera glycines Gene Locus: chr6:5862293-5866771 Feature type: polypeptideProtein Sequence
Length: 515
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.174 | 0.424 | 1.339 | 0.809 | 0.797 | 0.67 | 0.874 | 1.294 | 1.706 | 0.53 | 1.828 | 1.51 | 1.008 | 1.308 | 1.082 | 0.859 | 1.059 | 1.195 | 1.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11522
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKAQRRKERLLREKRARE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.056
|
0.054
|
0.019
|
0.114
|
0.253
|
0.185
|
0.116
|
0.038
|
0.899
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010585
|
1.000
|
1.000
|
Hsc_gene_7182.t1
|
Hsc_gene_7182.t1
|
— |
Q93704.2 Sex peptide receptor-related protein 2 [Caenorhabditis elegans]
|
KAF7639087.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0008528|GO:0016020
|
GO:0005575_0.850|GO:0110165_0.850|GO:0008150_0.846|GO:0071944_0.811|GO:0005886_0.805|GO:0016020_0.805|GO:0009987_0.758|GO:0003674_0.757|GO:0065007_0.717|GO:0050789_0.694|GO:0050896_0.677|GO:0050794_0.668|GO:0051716_0.660|GO:0005488_0.655|GO:0007154_0.655|GO:0023052_0.648|GO:0032501_0.648|GO:0007165_0.623|GO:0060089_0.607|GO:0038023_0.605|GO:0007186_0.549|GO:0004888_0.534
|
IPR000276+48-72_80-101_134-156_290-314_337-363+|IPR017452+63-355+|IPR019427+55-372+|IPR053071+43-425+
|
— |
PF10324+55-372+Serpentine_type_7TM_GPCR_chemoreceptor_Srw
|
— |
PTHR47023+43-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
385-515
|
1.000
|
1-384
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
58300.280
|
8.695
|
18.500
|
18.835
|
12.621
|
39.806
|
60.194
|
11.650
|
7.184
|
47.961
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
446.366
|
309.085
|
587.363
|
411.836
|
140.408
|
93.926
|
220.389
|
338.827
|
34.349
|
1138.901
|
665.521
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
0.277
|
-0.403
|
-1.583
|
-0.566
|
1.240
|
1.749
|
-0.480
|
-5.129
|
3.692
|
— | — | — |
No JSON data available for plots.