Hg_chrom6_TN10mRNA_12228
Organism: Heterodera glycines Gene Locus: chr6:5875159-5878603 Feature type: polypeptideProtein Sequence
Length: 648
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 1.256 | 0.954 | 0.745 | 1.235 | 1.187 | 0.79 | 1.157 | 0.652 | 1.21 | 1.005 | 1.997 | 0.729 | 0.92 | 1.039 | 1.631 | 0.784 | 0.585 | 0.356 | 0.454 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11525
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.872
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
AKAKEKPRPAKERL,RKTNTTTKLTRDCRK,KKEKPKMKEADEKKKEQ,KKKEQANCEKKEQKREEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.645
|
0.112
|
0.011
|
0.622
|
0.083
|
0.123
|
0.089
|
0.011
|
0.143
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010587
|
1.000
|
1.000
|
Hsc_gene_7180.t1
|
Hsc_gene_7180.t1
|
— |
G5EDE9.1 ANK repeat-containing protein nipk-1 [Caenorhabditis elegans]
|
KAH7732221.1 protein C33A11.1 [Aphelenchus avenae]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.875|GO:0005575_0.816|GO:0110165_0.784|GO:0065007_0.766|GO:0050789_0.760|GO:0009987_0.756|GO:0003674_0.744|GO:0005622_0.734|GO:0005488_0.725|GO:0050794_0.704|GO:0016020_0.684|GO:0005515_0.648|GO:0043226_0.641|GO:0050896_0.629|GO:0043229_0.606|GO:0043227_0.574|GO:0048518_0.559|GO:0043231_0.532|GO:0051716_0.513|GO:0048522_0.501
|
IPR002110+406-486_413-442_456-485_456-488_491-521_525-566_571-600+|IPR036770+408-643_413-618+|IPR051070+62-616+
|
SM00248+413-442_456-485_491-521_525-566_571-600+
|
PF12796+406-486+Ankyrin_repeats_(3_copies)
|
— |
PTHR46680+62-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-220;307-383
|
2.000
|
221-306;384-648
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
70422.950
|
6.659
|
1.500
|
26.698
|
6.944
|
52.932
|
47.068
|
14.043
|
12.654
|
54.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4527.605
|
6367.293
|
8477.566
|
5008.379
|
4032.188
|
4376.231
|
2742.476
|
6671.994
|
2716.749
|
3642.161
|
3245.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.184
|
-0.483
|
-0.651
|
-0.344
|
0.133
|
-0.664
|
0.509
|
-1.143
|
— | — | — | — | — |
No JSON data available for plots.