Hg_chrom6_TN10mRNA_12229
Organism: Heterodera glycines Gene Locus: chr6:5887708-5890113 Feature type: polypeptideProtein Sequence
Length: 517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 0.675 | 0.809 | 0.734 | 1.225 | 1.042 | 0.783 | 1.354 | 1.504 | 1.333 | 0.645 | 1.365 | 0.806 | 1.488 | 1.342 | 1.078 | 0.729 | 0.733 | 0.744 | 0.683 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11526
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.470
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
chloroplast_transit_peptide
|
plastid
|
— |
PKKAK
|
67-87
|
0.908
|
2-31
|
0.998
|
— | — |
0.000
|
— | — |
0.243
|
0.086
|
0.978
|
0.253
|
0.035
|
0.107
|
0.064
|
0.023
|
0.133
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010588
|
1.000
|
1.000
|
Hsc_gene_7178.t1
|
Hsc_gene_7178.t1
|
— |
Q93703.1 Tyrosine aminotransferase [Caenorhabditis elegans]
|
KAI1732184.1 aminotransferase class I and II domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004838|GO:0006520|GO:0008483|GO:0009058|GO:0009072|GO:0030170
|
GO:0008150_0.795|GO:0003674_0.688|GO:0005575_0.654|GO:0110165_0.647|GO:0009987_0.560|GO:0003824_0.553|GO:0008152_0.544|GO:0005622_0.523
|
IPR004838+305-318+|IPR004839+100-458+|IPR005957+71-466+|IPR005958+71-466+|IPR015421+120-363+|IPR015422+101-461+|IPR015424+73-465+
|
— |
PF00155+100-458+Aminotransferase_class_I_and_II
|
— |
PTHR45744+66-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-112;477-517
|
1.000
|
113-476
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
56997.290
|
6.727
|
2.000
|
25.338
|
8.897
|
44.294
|
55.706
|
13.540
|
11.799
|
49.903
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2138.797
|
1003.354
|
221.282
|
1061.570
|
3002.796
|
1816.832
|
2236.159
|
10989.231
|
0.000
|
1733.029
|
990.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.406
|
— |
2.368
|
1.468
|
-0.708
|
— |
2.483
|
-2.154
|
-11.554
|
10.909
|
— | — | — |
No JSON data available for plots.