Hg_chrom6_TN10mRNA_12230
Organism: Heterodera glycines Gene Locus: chr6:5892817-5899243 Feature type: polypeptideProtein Sequence
Length: 876
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.85 | 0.768 | 0.551 | 1.389 | 1.581 | 0.815 | 1.998 | 0.71 | 1.573 | 0.484 | 1.074 | 0.793 | 1.098 | 1.677 | 1.5 | 0.767 | 0.726 | 0.527 | 0.101 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11527
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.882
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|cell_membrane
|
— |
KHLKRGRRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.318
|
0.195
|
0.036
|
0.660
|
0.183
|
0.306
|
0.276
|
0.047
|
0.578
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002329
|
1.000
|
3.000
|
Hsc_gene_7176.t1;Hsc_gene_7176.t2;Hsc_gene_7176.t3
|
Hsc_gene_7176.t1;Hsc_gene_7176.t3
|
— |
Q94071.5 Liprin-beta homolog [Caenorhabditis elegans]
|
KAF7632843.1 SAM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.824|GO:0110165_0.823|GO:0005622_0.778|GO:0008150_0.720|GO:0009987_0.689|GO:0005737_0.649|GO:0065007_0.598|GO:0050789_0.587|GO:0016020_0.584|GO:0016043_0.558|GO:0071840_0.558|GO:0071944_0.533
|
IPR001660+574-638_577-638_644-710_654-708_655-710_735-804_735-807+|IPR013761+565-650_572-637_648-718_651-721_729-825+|IPR029515+45-238+
|
SM00454+574-638_644-710_735-807+
|
PF00536+654-708+SAM_domain_(Sterile_alpha_motif)|PF07647+735-804+SAM_domain_(Sterile_alpha_motif)
|
— |
PTHR12587+45-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-527;854-876
|
1.000
|
528-853
|
3tad_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
96736.610
|
6.876
|
7.500
|
27.968
|
7.877
|
52.968
|
47.032
|
15.411
|
12.557
|
49.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1601.307
|
6114.638
|
1800.654
|
1367.432
|
970.157
|
1507.573
|
1004.850
|
4119.279
|
407.201
|
368.601
|
385.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.994
|
-2.298
|
-0.288
|
-0.527
|
0.651
|
-0.576
|
1.337
|
-1.890
|
— |
1.908
|
— | — | — |
No JSON data available for plots.