Hg_chrom6_TN10mRNA_12231
Organism: Heterodera glycines Gene Locus: chr6:5902007-5904793 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 1.563 | 1.114 | 0.954 | 0.791 | 1.115 | 0.471 | 1.186 | 1.405 | 1.015 | 0.749 | 1.163 | 1.592 | 0.646 | 1.694 | 1.581 | 0.583 | 0.988 | 1.52 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11528
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVK
|
38-68
|
0.929
|
4-33
|
0.997
|
— | — |
0.000
|
— | — |
0.522
|
0.247
|
0.068
|
0.370
|
0.089
|
0.024
|
0.062
|
0.032
|
0.051
|
0.174
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010589
|
1.000
|
1.000
|
Hsc_gene_7174.t1
|
Hsc_gene_7174.t1;Hsc_gene_7190.t1
|
F28D1.7a
|
P62266.3 Small ribosomal subunit protein uS12 [Homo sapiens]
|
KAI1709849.1 DNA excision repair protein ERCC-8 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005515|GO:0005840|GO:0006283|GO:0006412
|
GO:0005575_0.828|GO:0110165_0.821|GO:0005622_0.716|GO:0043226_0.661|GO:0043229_0.645|GO:0008150_0.629|GO:0003674_0.530|GO:0016020_0.525
|
IPR001680+105-147_114-156_116-147_198-235_207-235_222-244_267-305_276-305_276-314_368-407_373-406_375-406+|IPR006032+441-483_448-455+|IPR012340+418-486_442-481+|IPR015943+16-410+|IPR019775+292-306+|IPR036322+63-410+|IPR042238+19-435+
|
SM00320+105-147_198-235_267-305_368-407+
|
PF00164+441-483+Ribosomal_protein_S12/S23|PF00400+116-147_207-235_276-305_373-406+WD_domain,_G-beta_repeat
|
G3DSA:2.40.50.140:FF:000007+420-486+40S_ribosomal_protein_S23
|
PTHR46202+19-435+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
6zvj_j
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
57868.660
|
8.933
|
18.000
|
26.482
|
11.660
|
52.174
|
47.826
|
15.613
|
10.870
|
50.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
1076.795
|
1878.848
|
976.577
|
857.556
|
873.045
|
726.417
|
868.235
|
928.129
|
742.107
|
1488.596
|
1168.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.174
|
-1.269
|
— | — |
-0.250
|
0.266
|
— | — | — | — | — | — | — |
No JSON data available for plots.