Hg_chrom6_TN10mRNA_12238
Organism: Heterodera glycines Gene Locus: chr6:5914371-5916846 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.173 | 0.917 | 0.819 | 0.593 | 0.685 | 0.671 | 1.335 | 1.319 | 1.363 | 0.405 | 1.222 | 2.803 | 1.084 | 1.211 | 0.805 | 0.827 | 1.214 | 0.685 | 0.873 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11534
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
37-57
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.040
|
0.047
|
0.032
|
0.061
|
0.692
|
0.439
|
0.520
|
0.001
|
0.511
|
0.129
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010592
|
1.000
|
1.000
|
Hsc_gene_7170.t1
|
Hsc_gene_7170.t1
|
— |
Q61469.1 Phospholipid phosphatase 1 [Mus musculus]
|
KAH7723209.1 Protein F53C3.13 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006644
|
GO:0008150_0.895|GO:0009987_0.831|GO:0005575_0.793|GO:0110165_0.789|GO:0003674_0.755|GO:0016020_0.745|GO:0071944_0.723|GO:0005886_0.708|GO:0003824_0.646|GO:0008152_0.609|GO:0044238_0.582|GO:0016787_0.580|GO:0044237_0.576|GO:0016788_0.557|GO:0016791_0.549|GO:0042578_0.549|GO:0006629_0.533|GO:0006793_0.533|GO:0006796_0.532|GO:0044255_0.527
|
IPR000326+149-299_151-304+|IPR036938+70-304+|IPR043216+62-303+
|
SM00014+149-299+
|
PF01569+151-304+PAP2_superfamily
|
— |
PTHR10165+62-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;332-337
|
1.000
|
4-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
38075.090
|
7.391
|
4.500
|
19.881
|
16.617
|
38.279
|
61.721
|
11.276
|
8.605
|
50.445
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
magenta
|
735.492
|
382.085
|
507.168
|
562.235
|
459.236
|
574.269
|
1634.480
|
3073.147
|
140.967
|
414.822
|
297.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.178
|
0.420
|
0.258
|
-0.324
|
0.338
|
1.519
|
2.313
|
-0.768
|
— | — | — | — | — |
No JSON data available for plots.