Hg_chrom6_TN10mRNA_12240
Organism: Heterodera glycines Gene Locus: chr6:5921888-5925649 Feature type: polypeptideProtein Sequence
Length: 243
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 1.148 | 0.524 | 0.71 | 0.274 | 1.161 | 0.686 | 0.0 | 0.732 | 1.613 | 0.499 | 1.695 | 2.515 | 0.712 | 1.008 | 1.705 | 1.012 | 1.06 | 1.583 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11536
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.111
|
0.189
|
0.028
|
0.109
|
0.469
|
0.668
|
0.811
|
0.170
|
0.240
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010594
|
1.000
|
1.000
|
Hsc_gene_7168.t1
|
Hsc_gene_7168.t1
|
— | — |
KAH7723202.1 Protein C18E9.10 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016192
|
GO:0005575_0.935|GO:0110165_0.930|GO:0016020_0.910|GO:0043226_0.772|GO:0043227_0.763|GO:0071944_0.752|GO:0005886_0.742|GO:0005622_0.648|GO:0005737_0.637|GO:0043229_0.621|GO:0043231_0.621|GO:0005773_0.612|GO:0012505_0.584|GO:0031090_0.554|GO:0008150_0.545|GO:0009987_0.503
|
IPR007305+104-214+|IPR011691+67-223+|IPR036259+97-208+
|
— |
PF04178+104-214+Got1/Sft2-like_family
|
— |
PTHR23137+67-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
26822.060
|
9.891
|
9.000
|
12.757
|
13.580
|
40.329
|
59.671
|
8.230
|
4.527
|
53.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
547.935
|
669.450
|
485.624
|
498.421
|
543.365
|
531.999
|
648.232
|
517.849
|
605.475
|
482.506
|
535.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.694
|
-0.563
|
0.147
|
— | — |
0.295
|
— |
0.466
|
— | — | — | — | — |
No JSON data available for plots.