SCN Proteipedia

Hg_chrom6_TN10mRNA_12243

Organism: Heterodera glycines Gene Locus: chr6:5938044-5945612 Feature type: polypeptide

Protein Sequence

Length: 1,658

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.792	0.743	0.746	0.478	1.045	0.959	0.646	0.935	1.407	1.728	0.557	1.242	1.424	0.847	1.502	1.318	0.89	1.097	1.299	0.532	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11539	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-Not_Clustered	0.958

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	KRRLAHDALAVRRHHR,RKSTRGSSAVGETRERKS,RKSTRGSSAVRETRERKS	—	—	—	—	—	—	0.018	—	—	0.093	0.098	0.011	0.109	0.396	0.648	0.305	0.052	0.548	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010597	1.000	1.000	Hsc_gene_7165.t1	Hsc_gene_7165.t1	—	Q9U2G5.3 Multidrug resistance protein mrp-7 [Caenorhabditis elegans]	KAI3414270.1 Multidrug resistance-associated protein 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0055085\|GO:0140359	GO:0008150_0.906\|GO:0005575_0.864\|GO:0110165_0.864\|GO:0016020_0.823\|GO:0009987_0.751\|GO:0071944_0.745\|GO:0005886_0.740\|GO:0051179_0.699\|GO:0006810_0.691\|GO:0051234_0.691\|GO:0003674_0.623\|GO:0055085_0.585\|GO:0050896_0.550\|GO:0005215_0.501	IPR003439+706-936_725-863_1413-1647_1430-1578+\|IPR003593+734-1104_1439-1623+\|IPR011527+367-637_367-650_1089-1351_1090-1375+\|IPR017871+836-850_1550-1564+\|IPR027417+693-960_722-927_1399-1649_1404-1646+\|IPR036640+347-667_349-658_1054-1393_1083-1392+\|IPR050173+214-1647+	SM00382+734-1104_1439-1623+	PF00005+725-863_1430-1578+ABC_transporter\|PF00664+367-637_1089-1351+ABC_transporter_transmembrane_region	G3DSA:1.20.1560.10:FF:000001+1054-1393+ATP-binding_cassette_subfamily_C_member_1\|G3DSA:1.20.1560.10:FF:000081+344-667+Protein_CBG24505\|G3DSA:3.40.50.300:FF:000074+1397-1647+Multidrug_resistance-associated_protein_5_isoform_1\|G3DSA:3.40.50.300:FF:000997+693-957+Multidrug_resistance-associated_protein_1	PTHR24223+214-1647+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	922-1060;1637-1658	2.000	1-921;1061-1636	7s5v_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.737	186417.680	8.368	26.500	23.281	10.495	44.873	55.127	12.907	10.374	47.226

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1085.193	375.445	2179.822	770.305	619.879	456.401	1489.660	561.555	2429.929	505.373	1330.183

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.309	0.899	-1.393	-0.346	-0.426	1.717	—	1.548	—	—	—	—	—

No JSON data available for plots.

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