SCN Proteipedia

Hg_chrom6_TN10mRNA_12245

Organism: Heterodera glycines Gene Locus: chr6:5948285-5950816 Feature type: polypeptide

Protein Sequence

Length: 436

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.64	1.12	0.667	0.554	1.491	1.941	0.546	0.917	0.561	1.178	1.251	1.619	1.083	1.323	1.217	1.343	0.827	1.043	0.882	0.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11540	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PAKAKIGRKRRKR,KKHWGEEEEKGQKVRGERK,RKTKLTEDPAKAKIGRKRR	—	—	34-81	0.997	—	—	0.000	—	—	0.947	0.155	0.004	0.379	0.019	0.024	0.024	0.012	0.037	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002330	2.000	2.000	Hsc_gene_7164.t1;Hsc_gene_7164.t2	Hsc_gene_7164.t1	—	Q01070.1 Enhancer of split mgamma protein [Drosophila melanogaster]	KAF7637141.1 BHLH domain-containing protein [Meloidogyne graminicola]	No	-0.410

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046983	GO:0008150_0.901\|GO:0009987_0.870\|GO:0050789_0.863\|GO:0065007_0.863\|GO:0050794_0.840\|GO:0003674_0.793\|GO:0005488_0.793\|GO:0048519_0.699\|GO:0005575_0.689\|GO:0110165_0.686\|GO:0048523_0.684\|GO:0008152_0.667\|GO:0043170_0.667\|GO:0019222_0.662\|GO:0009058_0.659\|GO:0009059_0.659\|GO:0044237_0.659\|GO:0044249_0.659\|GO:0005622_0.656\|GO:0010467_0.655\|GO:0031323_0.652\|GO:0032501_0.652\|GO:0060255_0.645\|GO:0044238_0.641\|GO:0080090_0.641\|GO:0032502_0.636\|GO:0048856_0.636\|GO:0006139_0.635\|GO:0090304_0.633\|GO:0016070_0.630\|GO:0034654_0.630\|GO:0141187_0.629\|GO:0032774_0.621\|GO:0043226_0.621\|GO:0009889_0.620\|GO:0031326_0.620\|GO:0010556_0.619\|GO:0010468_0.617\|GO:0097159_0.615\|GO:0043229_0.607\|GO:0003676_0.604\|GO:0019219_0.599\|GO:0006351_0.591\|GO:0051252_0.589\|GO:2001141_0.588\|GO:0006355_0.585\|GO:0009892_0.580\|GO:0007275_0.579\|GO:0010605_0.573\|GO:0031324_0.572\|GO:0009890_0.565\|GO:0031327_0.565\|GO:0010558_0.564\|GO:0048731_0.561\|GO:0003677_0.559\|GO:0045934_0.559\|GO:0051253_0.559\|GO:0045892_0.557\|GO:1902679_0.557\|GO:0006366_0.552\|GO:0006357_0.546\|GO:0043565_0.528\|GO:0000122_0.526\|GO:0016020_0.523\|GO:0030154_0.509\|GO:0048869_0.509\|GO:0007399_0.505	IPR011598+95-149_97-150_101-155+\|IPR036638+87-153_94-173+\|IPR050370+92-263+	SM00353+101-155+	PF00010+97-150+Helix-loop-helix_DNA-binding_domain	—	PTHR10985+92-263+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-19;292-436	1.000	20-291	2mh3_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.869	49094.790	9.039	11.000	28.670	6.881	55.505	44.495	16.055	12.615	48.394

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	329.995	730.124	453.194	192.952	313.765	427.316	989.757	462.404	68.531	53.761	60.091

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.918	-2.057	-1.123	0.669	0.460	1.224	—	1.242	—	—	—	—	—

No JSON data available for plots.

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