Hg_chrom6_TN10mRNA_12246
Organism: Heterodera glycines Gene Locus: chr6:5954114-5958001 Feature type: polypeptideProtein Sequence
Length: 610
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 0.877 | 1.252 | 0.961 | 0.874 | 1.429 | 0.527 | 1.967 | 1.239 | 1.462 | 0.646 | 1.157 | 1.184 | 0.788 | 1.338 | 1.522 | 0.618 | 1.068 | 0.631 | 0.53 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11541
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.237
|
0.219
|
0.017
|
0.517
|
0.254
|
0.567
|
0.478
|
0.045
|
0.372
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004406
|
2.000
|
1.000
|
Hsc_gene_7163.t1
|
Hsc_gene_7163.t1
|
— | — |
KAI1727691.1 vesicle coat protein involved in golgi to plasma membrane transport domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0008150_0.957|GO:0005575_0.928|GO:0110165_0.928|GO:0009987_0.903|GO:0065007_0.880|GO:0050789_0.862|GO:0005622_0.850|GO:0050794_0.834|GO:0050896_0.820|GO:0051716_0.786|GO:0071840_0.776|GO:0016043_0.774|GO:0008152_0.772|GO:0044238_0.769|GO:0043170_0.766|GO:0048518_0.764|GO:0044237_0.760|GO:0009058_0.758|GO:0007154_0.757|GO:0023052_0.755|GO:0048522_0.751|GO:0048519_0.744|GO:0044249_0.742|GO:0007165_0.740|GO:0009059_0.736|GO:0019222_0.735|GO:0031323_0.734|GO:0048523_0.731|GO:0060255_0.729|GO:0010467_0.728|GO:0080090_0.726|GO:0010646_0.723|GO:0006139_0.720|GO:0023051_0.716|GO:0048583_0.716|GO:0009889_0.710|GO:0010556_0.710|GO:0031326_0.710|GO:0009966_0.709|GO:0034654_0.709|GO:0090304_0.709|GO:0010468_0.707|GO:0016070_0.704|GO:0141187_0.703|GO:0032774_0.699|GO:0010647_0.695|GO:0023056_0.694|GO:0035556_0.694|GO:1902531_0.694|GO:0048584_0.693|GO:0019219_0.692|GO:0009892_0.691|GO:0051252_0.690|GO:0006351_0.689|GO:0031324_0.689|GO:0009967_0.688|GO:0010605_0.688|GO:0141124_0.688|GO:2001141_0.688|GO:0006355_0.687|GO:0010648_0.685|GO:0048585_0.685|GO:0009968_0.684|GO:0023057_0.684|GO:0006366_0.683|GO:0009890_0.683|GO:0010558_0.683|GO:0031327_0.683|GO:0006357_0.681|GO:1902533_0.680|GO:0045934_0.677|GO:0051253_0.677|GO:0045892_0.676|GO:1902679_0.676|GO:0000122_0.675|GO:1902532_0.675|GO:0031929_0.670|GO:0032006_0.670|GO:0032008_0.670|GO:0016020_0.575|GO:0043226_0.519|GO:0003674_0.518|GO:0071944_0.499|GO:0043229_0.498|GO:0005737_0.495|GO:0043227_0.484|GO:0005886_0.481|GO:0032501_0.462|GO:0043231_0.458|GO:0032502_0.455|GO:0048856_0.455|GO:0005488_0.447|GO:0005515_0.430|GO:0051179_0.422|GO:0007275_0.420|GO:0048731_0.410|GO:0019538_0.402|GO:0030154_0.402|GO:0048869_0.402|GO:0048468_0.398|GO:0006950_0.386|GO:0003824_0.380|GO:0051239_0.378|GO:0048513_0.376|GO:0009893_0.372|GO:0006996_0.371|GO:0007166_0.371|GO:0043412_0.371|GO:0036211_0.368|GO:0044085_0.367|GO:0050793_0.367|GO:0032991_0.366|GO:0005773_0.364|GO:0008219_0.364|GO:0012501_0.364|GO:0008283_0.363|GO:0031325_0.363|GO:0006915_0.362|GO:0043067_0.362|GO:0009719_0.360|GO:0016740_0.360|GO:0022607_0.359|GO:0051128_0.359|GO:0051246_0.359|GO:0042981_0.358|GO:0042592_0.357|GO:0033554_0.356|GO:0009056_0.355|GO:0045595_0.355|GO:0042127_0.354|GO:0006793_0.353|GO:0009790_0.353|GO:0006796_0.352|GO:0051241_0.351
|
IPR021713+3-589+|IPR032035+388-589+|IPR037520+117-328+|IPR037521+104-610+|IPR044886+506-590+
|
— |
PF11704+117-328+Vesicle_coat_protein_involved_in_Golgi_to_plasma_membrane_transport|PF16692+388-589+Folliculin_C-terminal_domain
|
— |
PTHR31441+3-589+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-610
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
68736.160
|
6.772
|
4.000
|
26.885
|
10.820
|
50.656
|
49.344
|
14.754
|
12.131
|
49.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
521.319
|
952.441
|
479.453
|
341.192
|
466.612
|
422.954
|
773.421
|
603.071
|
359.260
|
496.646
|
437.766
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.222
|
-1.619
|
-0.381
|
0.420
|
— |
0.881
|
0.404
|
0.503
|
— | — | — | — | — |
No JSON data available for plots.