Hg_chrom6_TN10mRNA_12248
Organism: Heterodera glycines Gene Locus: chr6:5961119-5963547 Feature type: polypeptideProtein Sequence
Length: 467
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.046 | 0.797 | 1.012 | 0.222 | 1.999 | 0.878 | 0.663 | 0.642 | 0.809 | 1.186 | 1.33 | 1.512 | 0.892 | 1.482 | 1.267 | 1.224 | 0.597 | 0.779 | 0.494 | 0.063 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11543
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRSR,RRSGVHFMEQKWKKE,KKAALWMEKRTRRMKQ,KKEFNSNLLNEANVRRKDF,RRKDFLAQLFVKEKQRKEK,RKDFLAQLFVKEKQRKEKV,MRRKGMLGKGTAAIRGKAAKPKKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.167
|
0.173
|
0.005
|
0.661
|
0.074
|
0.227
|
0.260
|
0.022
|
0.126
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010598
|
1.000
|
1.000
|
Hsc_gene_7162.t1
|
Hsc_gene_7162.t1
|
— | — |
KHJ97366.1 prenyltransferase and squalene oxidase repeat-containing domain protein [Oesophagostomum dentatum]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003779|GO:0005769|GO:0034314|GO:0043014|GO:0071203
|
— |
IPR003124+343-365+|IPR021854+3-111+|IPR028290+2-449+
|
SM00246+343-365+
|
PF11945+3-111+WAHD_domain_of_WASH_complex
|
— |
PTHR23331+2-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
241-467
|
1.000
|
1-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
51646.360
|
5.130
|
-9.000
|
33.833
|
5.353
|
52.891
|
47.109
|
16.274
|
17.559
|
49.251
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
1201.745
|
1530.434
|
1114.289
|
1217.991
|
1394.246
|
1463.224
|
1152.147
|
1060.731
|
1714.888
|
621.568
|
1090.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.688
|
-0.467
|
0.238
|
0.163
|
— |
-0.335
|
-0.571
|
0.263
|
— | — | — | — | — |
No JSON data available for plots.