Hg_chrom6_TN10mRNA_12249
Organism: Heterodera glycines Gene Locus: chr6:5964813-5966425 Feature type: polypeptideProtein Sequence
Length: 408
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.339 | 0.513 | 0.624 | 0.845 | 0.817 | 2.137 | 1.984 | 0.368 | 0.327 | 0.629 | 0.483 | 1.298 | 0.613 | 3.347 | 0.65 | 0.805 | 0.402 | 0.668 | 0.0 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11544
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRKSR
|
35-57
|
0.985
|
109-130
|
1.000
|
— | — |
0.001
|
— | — |
0.049
|
0.054
|
0.011
|
0.163
|
0.465
|
0.280
|
0.394
|
0.003
|
0.586
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004407
|
1.000
|
2.000
|
Hsc_gene_7161.t1;Hsc_gene_7161.t2
|
Hsc_gene_7161.t1;Hsc_gene_7161.t2
|
— |
P34804.3 Cuticle collagen 40 [Caenorhabditis elegans]
|
KAF7633868.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+38-90_43-89+|IPR008160+270-326_332-391+|IPR050632+43-406+
|
SM01088+38-90+
|
PF01391+270-326_332-391+Collagen_triple_helix_repeat_(20_copies)|PF01484+43-89+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+43-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
109-408
|
1.000
|
1-108
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
40940.630
|
4.789
|
-6.500
|
15.441
|
5.882
|
34.069
|
65.931
|
7.108
|
8.333
|
66.176
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
1618.655
|
298.832
|
19.514
|
11.151
|
4361.752
|
12009.930
|
160.340
|
453.423
|
3.792
|
585.671
|
336.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.162
|
-4.881
|
— |
8.579
|
1.478
|
-6.220
|
-4.845
|
-1.355
|
-7.434
|
— | — | — | — |
No JSON data available for plots.