SCN Proteipedia

Hg_chrom6_TN10mRNA_12250

Organism: Heterodera glycines Gene Locus: chr6:5966643-5971931 Feature type: polypeptide

Protein Sequence

Length: 950

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	1.175	1.091	0.508	1.368	1.161	0.752	1.421	1.287	1.38	0.829	0.991	1.053	0.628	0.859	1.143	0.828	0.925	1.377	0.836	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11545	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.756

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	—	3-26	0.954	—	—	—	—	0.000	—	—	0.513	0.116	0.016	0.561	0.183	0.370	0.174	0.186	0.154	0.109

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010599	1.000	1.000	Hsc_gene_7160.t1	Hsc_gene_7160.t1	—	Q20168.3 Probable coatomer subunit beta' [Caenorhabditis elegans]	KAI1726667.1 coatomer WD associated region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005198\|GO:0005515\|GO:0006886\|GO:0016192\|GO:0030117	GO:0005575_0.924\|GO:0110165_0.921\|GO:0005622_0.846\|GO:0016020_0.766\|GO:0043226_0.715\|GO:0005737_0.704\|GO:0043229_0.694\|GO:0043227_0.670\|GO:0043231_0.638\|GO:0071944_0.623\|GO:0005886_0.609\|GO:0008150_0.606	IPR001680+4-43_46-85_49-85_88-127_91-127_95-127_131-171_132-170_138-171_174-215_177-215_181-224_218-257_220-256_225-266_260-299_457-492+\|IPR006692+319-764+\|IPR011044+244-496+\|IPR015943+11-300+\|IPR016453+2-949+\|IPR020472+114-128_202-216_244-258+\|IPR036322+3-297+\|IPR050844+2-380+	SM00320+4-43_46-85_88-127_131-171_174-215_218-257_260-299_457-492+	PF00400+49-85_91-127_132-170_177-215_220-256+WD_domain,_G-beta_repeat\|PF04053+319-764+Coatomer_WD_associated_region	G3DSA:1.25.40.470:FF:000001+590-803+Coatomer_subunit_beta\|G3DSA:2.130.10.10:FF:000008+11-300+Coatomer_subunit_beta	PTHR19876+2-380+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	801-950	1.000	1-800	8d30_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.608	106493.950	4.878	-29.500	26.737	11.263	49.368	50.632	12.526	14.211	48.632

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	tan	4332.683	3870.227	3359.889	4565.427	6025.958	6406.310	4640.436	3692.209	7341.068	1239.517	3854.468

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.433	0.101	0.550	0.368	—	-0.455	-0.899	0.472	2.464	—	2.511	—	—

No JSON data available for plots.

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