SCN Proteipedia

Hg_chrom6_TN10mRNA_12251

Organism: Heterodera glycines Gene Locus: chr6:5975982-5978931 Feature type: polypeptide

Protein Sequence

Length: 493

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.472	2.028	0.701	0.42	0.879	3.485	0.797	1.521	1.352	1.014	0.522	1.79	0.789	1.014	0.911	1.594	0.798	0.4	0.312	0.537	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11546	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	RRKKDIHNMIERRRRYN	—	—	—	—	—	—	0.000	—	—	0.835	0.182	0.007	0.449	0.063	0.113	0.088	0.017	0.065	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010600	1.000	1.000	Hsc_gene_7159.t3	Hsc_gene_7159.t1;Hsc_gene_7159.t2;Hsc_gene_7159.t3	—	H2KZZ2.1 Helix-loop-helix protein 30 [Caenorhabditis elegans]	KAF7633870.1 BHLH domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046983	GO:0008150_0.948\|GO:0009987_0.910\|GO:0005575_0.869\|GO:0110165_0.865\|GO:0005622_0.856\|GO:0065007_0.839\|GO:0050789_0.837\|GO:0050794_0.835\|GO:0043226_0.829\|GO:0043229_0.819\|GO:0008152_0.816\|GO:0009058_0.816\|GO:0009059_0.816\|GO:0010467_0.816\|GO:0043170_0.816\|GO:0044237_0.816\|GO:0044249_0.816\|GO:0006139_0.810\|GO:0016070_0.810\|GO:0044238_0.810\|GO:0090304_0.810\|GO:0032774_0.808\|GO:0034654_0.808\|GO:0141187_0.808\|GO:0006351_0.800\|GO:0019222_0.791\|GO:0031323_0.791\|GO:0080090_0.784\|GO:0060255_0.783\|GO:0009889_0.775\|GO:0031326_0.775\|GO:0010468_0.771\|GO:0010556_0.771\|GO:0048518_0.762\|GO:0019219_0.760\|GO:0048522_0.759\|GO:0051252_0.759\|GO:0006355_0.748\|GO:2001141_0.748\|GO:0009893_0.746\|GO:0016020_0.742\|GO:0031325_0.734\|GO:0010604_0.733\|GO:0009891_0.727\|GO:0031328_0.725\|GO:0010557_0.720\|GO:0045935_0.714\|GO:0051254_0.712\|GO:0003674_0.706\|GO:0005488_0.706\|GO:0006366_0.705\|GO:0043227_0.703\|GO:0006357_0.697\|GO:0045893_0.695\|GO:1902680_0.695\|GO:0005634_0.688\|GO:0043231_0.688\|GO:0003676_0.664\|GO:0097159_0.664\|GO:0045944_0.656\|GO:0003677_0.632\|GO:0043565_0.632\|GO:0003690_0.623\|GO:1990837_0.623\|GO:0000976_0.610\|GO:0001067_0.610\|GO:0050896_0.603\|GO:0140110_0.599\|GO:0003700_0.567\|GO:0043228_0.552\|GO:0043232_0.548\|GO:0000977_0.515\|GO:0005737_0.515\|GO:0051716_0.503	IPR011598+191-244_193-245_197-250+\|IPR036638+187-256_202-283+	SM00353+197-250+	PF00010+193-245+Helix-loop-helix_DNA-binding_domain	—	PTHR45776+16-363+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-493	0.000	—	7uxh_j	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.883	55128.880	6.662	1.500	20.081	8.114	58.418	41.582	10.953	9.128	48.479

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2926.322	4920.825	3023.670	2211.600	1312.782	1538.288	2336.297	7507.753	3187.301	1842.979	2419.117

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.931	-1.291	-0.344	-0.784	0.243	0.613	2.186	-1.543	—	—	—	—	—

No JSON data available for plots.

Back to Browser