SCN Proteipedia

Hg_chrom6_TN10mRNA_12252

Organism: Heterodera glycines Gene Locus: chr6:5979476-5983332 Feature type: polypeptide

Protein Sequence

Length: 580

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.361	1.844	0.502	0.416	1.523	0.928	0.718	1.207	1.533	2.307	0.862	1.014	0.67	0.928	1.02	1.305	0.82	0.627	0.398	0.406	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11547	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.566

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRLKRLK,KKLPTQIGSLRRLRE	—	—	—	—	—	—	0.000	—	—	0.420	0.181	0.019	0.664	0.285	0.278	0.320	0.035	0.542	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010601	1.000	1.000	Hsc_gene_7158.t1	Hsc_gene_7158.t1	—	Q1L8Y7.1 Leucine-rich repeat protein SHOC-2 [Danio rerio]	KAH7726446.1 leucine-rich repeat protein SHOC-2-like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.954\|GO:0009987_0.907\|GO:0065007_0.889\|GO:0050789_0.876\|GO:0050794_0.856\|GO:0050896_0.809\|GO:0005575_0.793\|GO:0051716_0.789\|GO:0110165_0.789\|GO:0048518_0.778\|GO:0005622_0.764\|GO:0048522_0.764\|GO:0007154_0.762\|GO:0023052_0.752\|GO:0007165_0.744\|GO:0010646_0.549\|GO:0023051_0.547\|GO:0048583_0.544\|GO:0009966_0.537\|GO:0035556_0.532\|GO:1902531_0.530\|GO:0141124_0.525\|GO:0010647_0.524\|GO:0023056_0.522\|GO:0048584_0.521\|GO:0009967_0.516\|GO:1902533_0.510\|GO:0007264_0.507\|GO:0003674_0.504\|GO:0051056_0.503	IPR001611+122-179_145-167_168-190_192-213_192-249_238-259_400-456_422-443_445-466_468-524+\|IPR003591+120-142_143-165_166-190_213-235_236-259_260-281_282-305_306-328_329-352_420-442_443-464_466-488_489-511_512-536+\|IPR032675+55-205_208-350_351-454_455-570+\|IPR050216+354-553+	SM00364+120-139_143-162_213-232_236-255_259-278_282-301_329-348_398-416_420-439_443-462_466-485+\|SM00365+120-142_166-185_190-208_213-238_420-451_466-491_512-528+\|SM00369+120-142_143-165_166-190_213-235_236-259_260-281_282-305_306-328_329-352_420-442_443-464_466-488_489-511_512-536+	PF13855+122-179_192-249_400-456_468-524+Leucine_rich_repeat	G3DSA:3.80.10.10:FF:000031+457-569+leucine-rich_repeat_protein_SHOC-2\|G3DSA:3.80.10.10:FF:000281+348-456+Leucine-rich_repeat_protein_soc-2	PTHR48051+354-553+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-111	1.000	112-580	9btm_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.796	64930.680	6.510	0.000	25.000	6.724	50.690	49.310	13.103	11.897	44.138

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	1691.837	3251.605	1659.366	1095.772	1031.812	1408.045	2672.305	1889.263	801.046	1922.939	1442.127

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.200	-1.706	-0.490	-0.119	0.463	0.935	0.320	0.643	—	—	—	—	—

No JSON data available for plots.

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