Hg_chrom6_TN10mRNA_12253
Organism: Heterodera glycines Gene Locus: chr6:5984969-5987579 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.787 | 0.848 | 1.515 | 1.078 | 1.128 | 1.469 | 0.62 | 0.26 | 1.505 | 1.056 | 1.578 | 0.613 | 0.868 | 1.002 | 0.85 | 0.67 | 0.683 | 1.263 | 0.801 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11548
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
KKKKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.403
|
0.272
|
0.006
|
0.520
|
0.462
|
0.513
|
0.450
|
0.030
|
0.772
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010602
|
1.000
|
1.000
|
Hsc_gene_7156.t1
|
Hsc_gene_7156.t1
|
Y51H4A.3a
|
Q22038.1 Ras-like GTP-binding protein rhoA [Caenorhabditis elegans]
|
KAI6233733.1 Ras family protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0007264
|
GO:0008150_0.937|GO:0005575_0.919|GO:0110165_0.918|GO:0009987_0.891|GO:0065007_0.861|GO:0005622_0.860|GO:0050789_0.853|GO:0050794_0.837|GO:0071840_0.817|GO:0016020_0.794|GO:0016043_0.790|GO:0071944_0.775|GO:0005886_0.757|GO:0005737_0.735|GO:0007154_0.674|GO:0003674_0.673|GO:0023052_0.673|GO:0043226_0.673|GO:0050896_0.665|GO:0043229_0.652|GO:0051716_0.642|GO:0043227_0.632|GO:0006996_0.631|GO:0048518_0.630|GO:0048522_0.623|GO:0007165_0.595|GO:0043231_0.574|GO:0005488_0.570|GO:0044085_0.561|GO:0051128_0.557|GO:0030054_0.549|GO:0098590_0.541|GO:0051179_0.524|GO:0007010_0.520|GO:0032502_0.520|GO:0048856_0.520|GO:0051234_0.512|GO:0032501_0.507|GO:0022607_0.502
|
IPR001806+1-192_7-178_8-181+|IPR003578+6-187+|IPR005225+5-159+|IPR027417+1-192_6-179+
|
SM00173+7-181+|SM00174+8-181+|SM00175+7-181+|SM00176+11-191+
|
PF00071+7-178+Ras_family
|
G3DSA:3.40.50.300:FF:000095+1-192+Rho-related_GTP-binding_protein_RhoC
|
PTHR24072+6-187+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-192
|
5c2k_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
21624.820
|
6.001
|
-0.500
|
30.208
|
7.812
|
48.438
|
51.562
|
15.104
|
15.104
|
49.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3547.395
|
3059.593
|
3449.762
|
3211.318
|
3562.086
|
3743.803
|
3726.513
|
4771.361
|
1394.627
|
4902.218
|
3398.965
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.067
|
— |
0.118
|
— | — | — | — |
-1.925
|
— | — | — | — |
No JSON data available for plots.