Hg_chrom6_TN10mRNA_12254
Organism: Heterodera glycines Gene Locus: chr6:5988606-5989187 Feature type: polypeptideProtein Sequence
Length: 104
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 0.671 | 1.399 | 0.0 | 1.763 | 1.233 | 1.488 | 0.481 | 0.641 | 0.78 | 1.02 | 1.697 | 0.801 | 0.37 | 0.981 | 0.687 | 0.788 | 1.457 | 0.0 | 1.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11549
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.743
|
0.162
|
0.021
|
0.555
|
0.195
|
0.203
|
0.132
|
0.009
|
0.103
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000363
|
4.000
|
4.000
|
Hsc_gene_12179.t1;Hsc_gene_21419.t1;Hsc_gene_5605.t1;Hsc_gene_7155.t1
|
Hsc_gene_21419.t1;Hsc_gene_7155.t1
|
— |
P55853.1 Small ubiquitin-related modifier [Caenorhabditis elegans]
|
KAI3410081.1 C4-methyl sterol oxidase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.906|GO:0009987_0.740|GO:0005575_0.709|GO:0110165_0.701|GO:0003674_0.674|GO:0005622_0.643|GO:0008152_0.590|GO:0044238_0.581|GO:0043170_0.580|GO:0043226_0.560|GO:0016020_0.546|GO:0043229_0.534|GO:0019538_0.529|GO:0005488_0.528|GO:0065007_0.523|GO:0050789_0.505
|
IPR000626+22-99_24-95+|IPR022617+24-93+|IPR029071+8-100+|IPR046332+23-98+
|
SM00213+24-95+
|
PF11976+24-93+Ubiquitin-2_like_Rad60_SUMO-like
|
G3DSA:3.10.20.90:FF:000280+7-99+Small_ubiquitin-related_modifier
|
PTHR10562+15-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-104
|
5xqm_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
11334.540
|
4.370
|
-6.500
|
30.769
|
8.654
|
48.077
|
51.923
|
12.500
|
18.269
|
52.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1952.520
|
1316.634
|
1020.642
|
2359.679
|
2639.036
|
1784.131
|
1782.358
|
1046.568
|
593.235
|
3616.455
|
2320.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.596
|
0.705
|
1.317
|
0.129
|
-0.550
|
— |
-0.871
|
0.910
|
-2.718
|
— | — | — | — |
No JSON data available for plots.