Hg_chrom6_TN10mRNA_12255
Organism: Heterodera glycines Gene Locus: chr6:5994033-5998375 Feature type: polypeptideProtein Sequence
Length: 855
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.21 | 0.87 | 1.085 | 1.089 | 0.916 | 0.81 | 0.654 | 0.994 | 0.91 | 1.17 | 0.673 | 1.032 | 0.877 | 1.754 | 1.17 | 1.571 | 0.767 | 0.833 | 0.63 | 0.482 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11550
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.542
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
RRRFK,RKCPKESMPCRKMPK,RRTPVDCLAVRDALGRKRC
|
— | — |
44-82
|
0.858
|
1-21
|
0.947
|
1.000
|
0.000
|
0.000
|
0.240
|
0.170
|
0.039
|
0.341
|
0.122
|
0.067
|
0.153
|
0.155
|
0.204
|
0.846
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002032
|
3.000
|
1.000
|
Hsc_gene_7154.t1
|
Hsc_gene_7154.t1
|
— |
Q10125.4 Uncharacterized protein F52C9.5 [Caenorhabditis elegans]
|
KAI1714469.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003609+105-193_136-191_533-612_547-613_613-707_623-706_631-702+|IPR052774+548-702+
|
SM00473+105-193_533-612_623-706+
|
PF00024+136-191_547-613_631-702+PAN_domain
|
— |
PTHR47327+548-702+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-490
|
2.000
|
1-270;491-855
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
92042.090
|
6.271
|
-2.500
|
23.626
|
7.602
|
46.199
|
53.801
|
12.164
|
11.462
|
59.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
251.575
|
133.106
|
49.204
|
45.897
|
58.688
|
883.311
|
229.366
|
501.739
|
43.874
|
354.742
|
221.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.663
|
-1.673
|
— | — |
3.927
|
-1.936
|
-0.932
|
-0.981
|
— | — | — | — | — |