SCN Proteipedia

Hg_chrom6_TN10mRNA_12258

Organism: Heterodera glycines Gene Locus: chr6:6019842-6021307 Feature type: polypeptide

Protein Sequence

Length: 318

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.585	0.951	1.315	0.542	0.891	0.726	0.599	1.415	1.258	1.827	0.905	0.925	1.572	0.907	1.476	0.988	0.67	0.953	1.209	0.832	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11553	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.718	0.146	0.027	0.666	0.047	0.121	0.060	0.035	0.090	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010604	1.000	1.000	Hsc_gene_7149.t1	Hsc_gene_7149.t1	—	P43450.1 Cyclin-dependent kinase 2 [Carassius auratus]	CDJ90673.1 Serine threonine protein kinase-related domain containing protein [Haemonchus contortus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.886\|GO:0009987_0.843\|GO:0065007_0.815\|GO:0050789_0.810\|GO:0005575_0.802\|GO:0050794_0.794\|GO:0003674_0.769\|GO:0003824_0.763\|GO:0016740_0.763\|GO:0110165_0.753\|GO:0140096_0.730\|GO:0016772_0.727\|GO:0005622_0.700\|GO:0004672_0.693\|GO:0016301_0.693\|GO:0016773_0.693\|GO:0050896_0.603\|GO:0004674_0.596\|GO:0007049_0.596\|GO:0071840_0.570\|GO:0005488_0.567\|GO:0016043_0.564\|GO:0005515_0.557\|GO:0051716_0.556\|GO:0008152_0.543\|GO:0051726_0.542\|GO:0005737_0.539\|GO:0043170_0.520\|GO:0006996_0.512\|GO:0022402_0.512\|GO:0044238_0.506	IPR000719+15-298_17-298+\|IPR008271+135-147+\|IPR011009+10-303+\|IPR050108+15-298+	SM00220+15-298+	PF00069+17-298+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000706+97-305+Cyclin-dependent_kinase_1\|G3DSA:3.30.200.20:FF:000927+12-96+Cyclin-dependent_kinase_2	PTHR24056+15-298+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-318	9ob6_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.687	36601.220	8.063	6.500	28.616	12.893	46.541	53.459	16.038	12.579	44.969

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	257.627	144.789	83.237	304.726	460.539	446.641	1054.025	142.080	4.146	135.495	79.203

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.030	0.936	1.982	0.565	—	1.249	-1.767	3.037	-5.172	6.431	—	—	—

No JSON data available for plots.

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