Hg_chrom6_TN10mRNA_12259
Organism: Heterodera glycines Gene Locus: chr6:6021472-6023296 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 0.938 | 0.733 | 0.695 | 1.109 | 0.982 | 0.6 | 1.613 | 1.523 | 1.798 | 0.55 | 1.898 | 1.68 | 1.086 | 1.44 | 0.95 | 0.826 | 0.794 | 1.396 | 0.593 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11554
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RPRR
|
15-35
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.104
|
0.233
|
0.013
|
0.165
|
0.837
|
0.215
|
0.109
|
0.008
|
0.172
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010605
|
1.000
|
1.000
|
Hsc_gene_7148.t1
|
Hsc_gene_7148.t1
|
— |
Q6ZWL3.2 Cytochrome P450 4V2 [Homo sapiens]
|
ABF06555.1 CYP31B1, partial [Nematoda environmental sample]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.877|GO:0009987_0.766|GO:0003674_0.747|GO:0008152_0.705|GO:0003824_0.659|GO:0005575_0.647|GO:0110165_0.647|GO:0044237_0.624|GO:0016020_0.588|GO:0044238_0.582|GO:0044281_0.575|GO:0006082_0.555|GO:0019752_0.555|GO:0043436_0.555|GO:0005622_0.543|GO:0016491_0.538|GO:0071944_0.534|GO:0005886_0.533|GO:0004497_0.530|GO:0006629_0.511|GO:0044255_0.504
|
IPR001128+33-491_303-320_358-369_433-442_442-453+|IPR002401+292-309_312-338_357-375_397-421_432-442_442-465+|IPR017972+435-444+|IPR036396+16-496_33-495+|IPR050196+21-495+
|
— |
PF00067+33-491+Cytochrome_P450
|
— |
PTHR24291+21-495+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-496
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
57193.530
|
7.505
|
8.000
|
24.597
|
13.105
|
44.153
|
55.847
|
13.911
|
10.685
|
42.339
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.213
|
0.077
|
0.150
|
0.509
|
0.526
|
0.884
|
0.201
|
0.140
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.