Hg_chrom6_TN10mRNA_12260
Organism: Heterodera glycines Gene Locus: chr6:6023453-6025064 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.15 | 1.199 | 0.853 | 1.465 | 1.479 | 0.556 | 1.099 | 0.916 | 1.485 | 1.956 | 0.808 | 1.45 | 0.634 | 1.121 | 0.942 | 0.45 | 0.583 | 0.211 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11554
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGKKRRVDGK,KKNKIVIVDLKKERL,RKEIEQLRAILEDRGKKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.909
|
0.066
|
0.004
|
0.387
|
0.022
|
0.048
|
0.055
|
0.006
|
0.050
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010606
|
1.000
|
1.000
|
Hsc_gene_7147.t1
|
Hsc_gene_7147.t1
|
— |
O22755.1 Probable E3 ubiquitin-protein ligase ATL44 [Arabidopsis thaliana]
|
KAI1729720.1 ring finger domain-containing protein [Ditylenchus destructor]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.862|GO:0005575_0.665|GO:0110165_0.643|GO:0008152_0.625|GO:0043170_0.620|GO:0003674_0.610|GO:0005622_0.601|GO:0044238_0.577|GO:0009987_0.567|GO:0043226_0.542|GO:0016020_0.539|GO:0043229_0.507
|
IPR001841+5-46_6-45_6-46+|IPR013083+3-161+|IPR052639+5-235+
|
SM00184+6-45+
|
PF13639+5-46+Ring_finger_domain
|
— |
PTHR46569+5-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-273
|
2.000
|
1-224;274-364
|
7r71_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
41766.820
|
9.317
|
15.000
|
35.989
|
9.066
|
56.044
|
43.956
|
20.604
|
15.385
|
41.484
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.213
|
0.077
|
0.150
|
0.509
|
0.526
|
0.884
|
0.201
|
0.140
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.