SCN Proteipedia

Hg_chrom6_TN10mRNA_12262

Organism: Heterodera glycines Gene Locus: chr6:6025237-6026716 Feature type: polypeptide

Protein Sequence

Length: 313

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.446	1.337	1.046	0.551	1.651	1.802	0.456	1.438	1.42	1.123	0.532	3.195	1.597	0.553	1.239	0.913	0.786	1.065	0.246	0.752	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11555	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.961

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.838	0.087	0.008	0.471	0.041	0.288	0.052	0.002	0.055	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002331	2.000	2.000	Hsc_gene_7146.t1;Hsc_gene_7146.t2	Hsc_gene_7146.t1;Hsc_gene_7146.t2	—	O60671.1 Cell cycle checkpoint protein RAD1 [Homo sapiens]	KAH7727753.1 repair protein Rad1/Rec1/Rad17 containing protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000077	GO:0008150_0.951\|GO:0009987_0.905\|GO:0005575_0.882\|GO:0110165_0.874\|GO:0065007_0.859\|GO:0003674_0.858\|GO:0005622_0.849\|GO:0050789_0.847\|GO:0050794_0.825\|GO:0050896_0.809\|GO:0051716_0.787\|GO:0071840_0.766\|GO:0016043_0.762\|GO:0048519_0.746\|GO:0023052_0.745\|GO:0007154_0.744\|GO:0006950_0.735\|GO:0007165_0.734\|GO:0048523_0.725\|GO:0006996_0.718\|GO:0033554_0.711\|GO:0035556_0.701\|GO:0007049_0.693\|GO:0022402_0.693\|GO:0051726_0.685\|GO:0006974_0.681\|GO:0010564_0.681\|GO:0044770_0.677\|GO:1901987_0.676\|GO:0010948_0.675\|GO:0045786_0.675\|GO:0000075_0.674\|GO:1901988_0.674\|GO:0000077_0.670\|GO:0031570_0.670\|GO:0042770_0.670\|GO:0016020_0.587\|GO:0043226_0.554\|GO:0043229_0.539\|GO:0008152_0.525\|GO:0043227_0.524\|GO:0005488_0.522\|GO:0044238_0.512	IPR003021+42-309_54-288_56-73_81-98_98-114_140-157_159-179_254-271_271-288_291-306+\|IPR046938+60-162_184-303+	—	PF02144+54-288+Repair_protein_Rad1/Rec1/Rad17	—	PTHR10870+42-309+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-313	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.816	36519.460	4.622	-14.500	28.115	11.502	52.077	47.923	12.460	15.655	41.853

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	512.792	259.169	227.994	279.903	450.400	330.945	794.045	205.656	73.376	1232.890	735.956

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.416	—	0.406	0.655	-0.431	1.274	-0.797	2.094	-4.150	—	—	—	—

No JSON data available for plots.

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