SCN Proteipedia

Hg_chrom6_TN10mRNA_12264

Organism: Heterodera glycines Gene Locus: chr6:6029351-6042854 Feature type: polypeptide

Protein Sequence

Length: 2,587

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.434	0.998	0.843	0.48	1.314	1.824	0.603	1.16	1.134	1.295	0.65	1.114	0.408	0.691	1.286	1.127	0.97	1.054	0.268	0.478	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11557	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.907

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KKKR,PLIKRIK	—	—	—	—	—	—	0.000	—	—	0.272	0.096	0.012	0.586	0.072	0.225	0.227	0.010	0.692	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010608	1.000	1.000	Hsc_gene_7144.t1	Hsc_gene_7144.t1;Hsc_gene_7144.t2	—	Q9Y4G6.4 Talin-2 [Homo sapiens]	KAI1717364.1 i/LWEQ domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001726\|GO:0003779\|GO:0005200\|GO:0005856\|GO:0005925\|GO:0007155\|GO:0051015	GO:0005575_0.897\|GO:0110165_0.886\|GO:0008150_0.720\|GO:0009987_0.662\|GO:0016043_0.539\|GO:0071840_0.539\|GO:0030054_0.518\|GO:0005622_0.513	IPR000299+87-434+\|IPR002404+344-431+\|IPR002558+2341-2579_2383-2579_2433-2577+\|IPR011993+339-436+\|IPR014352+230-338+\|IPR015009+1896-2013+\|IPR015224+525-679+\|IPR019747+205-233+\|IPR019748+235-344_243-336+\|IPR019749+83-344+\|IPR032425+4-83+\|IPR035963+227-339+\|IPR035964+688-816_786-922_2347-2530+\|IPR036476+524-681+\|IPR036723+1115-1247_1281-1393_1636-1705_1886-2014_2052-2176+\|IPR049108+951-1077+\|IPR054060+1704-1867+\|IPR054082+694-818_1085-1248_2022-2173_2187-2332+	SM00295+83-344+\|SM00307+2383-2579+\|SM01244+339-432+	PF00373+235-344+FERM_central_domain\|PF01608+2433-2577+I/LWEQ_domain\|PF02174+344-431+PTB_domain_(IRS-1_type)\|PF08913+1896-2013+Vinculin_Binding_Site\|PF09141+525-679+Talin,_middle_domain\|PF16511+4-83+N-terminal_or_F0_domain_of_Talin-head_FERM\|PF21692+951-1077+Talin,_R4_domain\|PF21865+1704-1867+Talin_1-like,_rod_segment_domain\|PF21896+694-818_1085-1248_2022-2173_2187-2332+Talin_IBS2B_domain	G3DSA:1.20.1410.10:FF:000001+2343-2530+Talin_2\|G3DSA:2.30.29.30:FF:000028+339-436+Talin_2	PTHR19981+1-2582+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	129-190;530-574;662-706;756-974;1102-1204;1287-1366;2550-2587	7.000	1-128;191-529;575-661;707-755;975-1101;1205-1286;1367-2549	6u4k_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.506	281844.850	5.968	-20.000	25.435	5.760	50.638	49.362	12.911	12.524	52.068

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	5744.454	12834.790	8591.454	4959.790	5217.161	8185.894	5646.508	10946.059	3344.433	1480.542	2279.353

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.808	-1.509	-0.684	—	0.665	-0.526	0.315	-0.813	—	—	—	—	—

No JSON data available for plots.

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