Hg_chrom6_TN10mRNA_12267
Organism: Heterodera glycines Gene Locus: chr6:6054551-6056021 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 0.537 | 0.559 | 0.796 | 0.641 | 1.446 | 2.015 | 0.513 | 0.57 | 1.04 | 0.583 | 0.754 | 0.926 | 2.712 | 1.151 | 1.209 | 0.546 | 0.699 | 0.197 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11559
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.651
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
37-57
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.045
|
0.072
|
0.014
|
0.144
|
0.453
|
0.327
|
0.341
|
0.007
|
0.628
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010611
|
1.000
|
1.000
|
Hsc_gene_7141.t1
|
Hsc_gene_454.t1;Hsc_gene_7141.t1
|
— |
P34804.3 Cuticle collagen 40 [Caenorhabditis elegans]
|
ETN86912.1 nematode cuticle collagen domain protein [Necator americanus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+43-95_46-90+|IPR008160+252-305+|IPR050632+48-388+
|
SM01088+43-95+
|
PF01391+252-305+Collagen_triple_helix_repeat_(20_copies)|PF01484+46-90+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+48-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-390
|
1.000
|
1-110
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
40092.260
|
9.187
|
12.000
|
17.436
|
7.436
|
37.179
|
62.821
|
10.513
|
6.923
|
62.051
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
235.024
|
550.292
|
240.352
|
274.719
|
530.122
|
573.358
|
104.674
|
375.006
|
5.565
|
30.859
|
20.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.424
|
-1.140
|
0.301
|
0.916
|
— |
-2.445
|
-0.719
|
-1.699
|
— |
5.941
|
4.084
|
— | — |
No JSON data available for plots.