Hg_chrom6_TN10mRNA_12268
Organism: Heterodera glycines Gene Locus: chr6:6056843-6058130 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 0.581 | 1.705 | 0.862 | 1.562 | 0.641 | 0.446 | 0.938 | 1.111 | 1.098 | 1.231 | 2.206 | 1.215 | 0.962 | 1.148 | 0.536 | 1.23 | 0.758 | 0.962 | 1.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11560
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.486
|
0.372
|
0.010
|
0.455
|
0.225
|
0.074
|
0.094
|
0.061
|
0.261
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010612
|
1.000
|
1.000
|
Hsc_gene_7140.t1
|
Hsc_gene_7140.t1
|
— |
A8XHQ1.1 Acireductone dioxygenase 3 [Caenorhabditis briggsae]
|
KAI1717429.1 ARD/ARD' family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010309
|
GO:0005575_0.805|GO:0110165_0.802|GO:0005622_0.759|GO:0005737_0.735|GO:0008150_0.649|GO:0009987_0.585|GO:0005829_0.515
|
IPR004313+1-154_3-157_30-156+|IPR011051+1-155+|IPR014710+1-159+
|
— |
PF03079+3-157+ARD/ARD'_family
|
— |
PTHR23418+1-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
18705.260
|
4.709
|
-6.500
|
34.375
|
12.500
|
50.625
|
49.375
|
15.625
|
18.750
|
45.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
2444.945
|
964.204
|
3489.867
|
2951.280
|
3752.211
|
3878.771
|
1562.781
|
4137.871
|
599.646
|
2470.533
|
1668.724
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.627
|
1.477
|
-0.133
|
0.314
|
— |
-1.302
|
— |
-1.262
|
-2.161
|
— | — | — | — |
No JSON data available for plots.