Hg_chrom6_TN10mRNA_12269
Organism: Heterodera glycines Gene Locus: chr6:6058457-6060016 Feature type: polypeptideProtein Sequence
Length: 292
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.513 | 0.747 | 0.827 | 0.628 | 0.615 | 1.427 | 0.856 | 1.294 | 1.111 | 0.519 | 1.007 | 2.093 | 0.593 | 1.118 | 1.027 | 1.011 | 1.245 | 0.263 | 1.209 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11561
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
26-J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRP
|
— | — | — | — |
1-29
|
0.638
|
0.906
|
0.000
|
0.000
|
0.177
|
0.314
|
0.173
|
0.409
|
0.332
|
0.470
|
0.410
|
0.019
|
0.508
|
0.864
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010613
|
1.000
|
1.000
|
Hsc_gene_7139.t1
|
Hsc_gene_7139.t1
|
— | — |
KAI1732489.1 lipase (class 2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016042|GO:0016787
|
— |
IPR002918+17-290_76-285+|IPR029058+44-290_75-260+
|
— |
PF01674+76-285+Lipase_(class_2)
|
G3DSA:3.40.50.1820:FF:000377+44-292+LIPaSe_related
|
PTHR32015+17-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-292
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
31857.290
|
8.145
|
5.500
|
18.493
|
13.699
|
40.753
|
59.247
|
10.616
|
7.877
|
55.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
143.517
|
31.738
|
3.889
|
5.412
|
46.201
|
392.593
|
29.642
|
87.504
|
2.056
|
402.478
|
230.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.246
|
-2.688
|
— |
3.060
|
3.103
|
-3.718
|
-2.286
|
-1.411
|
-5.266
|
— | — | — | — |