Hg_chrom6_TN10mRNA_12270
Organism: Heterodera glycines Gene Locus: chr6:6060224-6061868 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.546 | 1.091 | 0.591 | 1.369 | 0.421 | 0.926 | 0.731 | 1.986 | 0.722 | 1.561 | 0.328 | 1.911 | 1.504 | 0.903 | 1.547 | 1.392 | 1.243 | 1.149 | 1.389 | 0.743 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11562
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
RGRRRKQRRTRSTRRL
|
— | — |
7-36
|
0.970
|
— | — |
0.000
|
— | — |
0.247
|
0.128
|
0.012
|
0.276
|
0.552
|
0.635
|
0.480
|
0.004
|
0.272
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004408
|
2.000
|
1.000
|
Hsc_gene_7138.t1
|
Hsc_gene_7138.t1
|
— |
Q5PQ35.1 E3 ubiquitin-protein ligase MARCHF2 [Xenopus laevis]
|
KAF7632525.1 RING-CH-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.810|GO:0005575_0.776|GO:0110165_0.774|GO:0016020_0.734|GO:0071944_0.729|GO:0005886_0.709|GO:0005622_0.611|GO:0043226_0.598|GO:0043229_0.583|GO:0043227_0.582|GO:0003674_0.578|GO:0043231_0.573|GO:0005737_0.536|GO:0050896_0.515
|
IPR001841+68-119+|IPR011016+60-125_67-119_68-118+|IPR013083+61-124+
|
SM00744+67-119+
|
PF12906+68-118+RING-variant_domain
|
— |
PTHR46065+41-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;258-277
|
1.000
|
2-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
31228.080
|
9.188
|
16.500
|
19.495
|
13.718
|
45.126
|
54.874
|
13.718
|
5.776
|
52.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
purple
|
303.316
|
23.699
|
58.983
|
122.858
|
340.055
|
298.451
|
1423.881
|
87.061
|
28.782
|
422.300
|
253.649
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.083
|
2.234
|
1.168
|
1.438
|
— |
2.265
|
-1.886
|
4.175
|
— | — | — | — | — |
No JSON data available for plots.