Hg_chrom6_TN10mRNA_12273
Organism: Heterodera glycines Gene Locus: chr6:6064582-6065995 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 0.885 | 1.07 | 0.955 | 0.923 | 1.42 | 0.371 | 1.211 | 1.615 | 1.824 | 0.891 | 1.221 | 0.961 | 0.665 | 1.2 | 1.483 | 0.567 | 1.101 | 0.799 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11565
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
79-99
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.222
|
0.254
|
0.015
|
0.541
|
0.249
|
0.551
|
0.492
|
0.032
|
0.291
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004406
|
2.000
|
1.000
|
Hsc_gene_7163.t1
|
Hsc_gene_7163.t1
|
— | — |
KAI1727691.1 vesicle coat protein involved in golgi to plasma membrane transport domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.942|GO:0005575_0.934|GO:0110165_0.934|GO:0009987_0.889|GO:0005622_0.861|GO:0065007_0.855|GO:0050789_0.838|GO:0050794_0.811|GO:0050896_0.809|GO:0051716_0.778|GO:0071840_0.763|GO:0016043_0.762|GO:0008152_0.748|GO:0043170_0.747|GO:0044238_0.747|GO:0048518_0.747|GO:0023052_0.746|GO:0007154_0.745|GO:0044237_0.744|GO:0009058_0.742|GO:0007165_0.734|GO:0048522_0.733|GO:0044249_0.729|GO:0009059_0.727|GO:0048519_0.727|GO:0010467_0.721|GO:0019222_0.720|GO:0031323_0.718|GO:0048523_0.715|GO:0060255_0.714|GO:0006139_0.711|GO:0080090_0.711|GO:0010646_0.709|GO:0023051_0.705|GO:0048583_0.705|GO:0090304_0.701|GO:0009889_0.700|GO:0009966_0.700|GO:0031326_0.700|GO:0034654_0.700|GO:0010556_0.699|GO:0010468_0.697|GO:0141187_0.695|GO:0016070_0.694|GO:0032774_0.693|GO:0035556_0.692|GO:1902531_0.692|GO:0010647_0.688|GO:0023056_0.688|GO:0048584_0.686|GO:0006351_0.685|GO:0009892_0.685|GO:0019219_0.685|GO:0141124_0.685|GO:0051252_0.684|GO:0010605_0.683|GO:2001141_0.683|GO:0006355_0.682|GO:0009967_0.682|GO:0031324_0.682|GO:0010648_0.681|GO:0023057_0.681|GO:0048585_0.681|GO:0009968_0.680|GO:0006366_0.679|GO:0009890_0.678|GO:0010558_0.678|GO:0031327_0.678|GO:1902533_0.678|GO:0006357_0.677|GO:0045892_0.674|GO:0045934_0.674|GO:0051253_0.674|GO:1902532_0.674|GO:1902679_0.674|GO:0000122_0.670|GO:0031929_0.670|GO:0032006_0.670|GO:0032008_0.670|GO:0016020_0.594|GO:0043226_0.540|GO:0043229_0.530|GO:0005737_0.520|GO:0043227_0.506|GO:0071944_0.493|GO:0003674_0.486|GO:0043231_0.479|GO:0005886_0.477|GO:0005488_0.428|GO:0032501_0.427|GO:0051179_0.427|GO:0005515_0.418|GO:0032502_0.416|GO:0048856_0.416|GO:0019538_0.390|GO:0006950_0.389|GO:0007275_0.389|GO:0032991_0.382|GO:0030154_0.381|GO:0048869_0.381|GO:0005773_0.380|GO:0048731_0.380|GO:0006996_0.374|GO:0048468_0.374|GO:0051239_0.366|GO:0009893_0.364|GO:0044085_0.364|GO:0043412_0.363|GO:0003824_0.361|GO:0033554_0.360|GO:0036211_0.359|GO:0048513_0.359|GO:0007166_0.358|GO:0031325_0.358|GO:0008219_0.357|GO:0012501_0.357|GO:0008283_0.356|GO:0022607_0.356|GO:0043067_0.356|GO:0006915_0.355|GO:0009719_0.355|GO:0050793_0.355|GO:0042592_0.354|GO:0042981_0.353|GO:0051128_0.353|GO:0051246_0.353|GO:0006793_0.352|GO:0006796_0.351|GO:0009056_0.351
|
IPR021713+3-268+|IPR032035+67-268+|IPR044886+185-269+
|
— |
PF16692+67-268+Folliculin_C-terminal_domain
|
— |
PTHR31441+3-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
32530.740
|
7.614
|
4.500
|
25.606
|
7.958
|
48.789
|
51.211
|
14.187
|
11.419
|
46.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
46.403
|
12.481
|
5.660
|
3.105
|
4.828
|
5.525
|
51.697
|
42.167
|
8.746
|
149.404
|
89.122
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.374
|
-2.142
|
— | — | — |
3.237
|
2.823
|
— |
-4.243
|
— |
-4.737
|
— | — |
No JSON data available for plots.