SCN Proteipedia

Hg_chrom6_TN10mRNA_12275

Organism: Heterodera glycines Gene Locus: chr6:6108440-6113245 Feature type: polypeptide

Protein Sequence

Length: 1,010

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.898	1.059	0.9	0.58	1.254	1.472	0.601	1.485	0.858	0.91	0.915	1.398	1.155	1.428	1.515	1.16	0.682	0.96	0.838	0.612	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11567	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.924

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	18-38	0.985	—	—	0.000	—	—	0.449	0.241	0.017	0.665	0.089	0.185	0.112	0.034	0.304	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010614	1.000	1.000	Hsc_gene_1739.t1	Hsc_gene_1739.t1	—	O45797.1 Serine/threonine-protein kinase WARTS homolog [Caenorhabditis elegans]	KAI1717970.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.960\|GO:0005575_0.938\|GO:0110165_0.936\|GO:0009987_0.933\|GO:0065007_0.898\|GO:0050789_0.891\|GO:0005622_0.883\|GO:0050794_0.863\|GO:0071840_0.743\|GO:0016043_0.740\|GO:0003674_0.699\|GO:0003824_0.699\|GO:0140096_0.699\|GO:0016740_0.689\|GO:0004672_0.686\|GO:0016301_0.686\|GO:0016772_0.686\|GO:0016773_0.686\|GO:0005737_0.665\|GO:0004674_0.649\|GO:0050896_0.644\|GO:0051716_0.609\|GO:0043226_0.583\|GO:0032502_0.582\|GO:0048856_0.582\|GO:0023052_0.573\|GO:0007154_0.571\|GO:0048519_0.568\|GO:0007165_0.556\|GO:0043229_0.547\|GO:0006996_0.546\|GO:0016020_0.544\|GO:0048523_0.538\|GO:0071944_0.524\|GO:0032501_0.518\|GO:0051179_0.513	IPR000719+536-694_536-846_735-846+\|IPR000961+847-917_847-925+\|IPR008271+656-668+\|IPR011009+517-878+\|IPR017441+542-566+\|IPR050236+337-916+	SM00133+847-917+\|SM00220+536-846+	PF00069+536-694_735-846+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000024+620-867+Probable_serine/threonine-protein_kinase_cot-1\|G3DSA:3.30.200.20:FF:000391+509-620+Large_tumor_suppressor_kinase_1	PTHR24356+337-916+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-383;927-1010	1.000	384-926	5ncl_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	114047.850	8.505	25.000	28.911	10.297	51.485	48.515	16.436	12.475	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2600.096	6700.973	3757.357	2275.547	1901.951	2333.175	2112.695	6443.619	678.113	1294.839	1030.528

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.064	-1.695	-0.615	-0.290	0.310	—	1.375	-1.472	—	—	—	—	—

No JSON data available for plots.

Back to Browser