Hg_chrom6_TN10mRNA_12276
Organism: Heterodera glycines Gene Locus: chr6:6114112-6121338 Feature type: polypeptideProtein Sequence
Length: 1,793
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 0.415 | 0.588 | 0.731 | 1.72 | 1.101 | 0.671 | 0.92 | 0.682 | 1.183 | 0.896 | 0.886 | 0.899 | 2.939 | 1.468 | 1.339 | 0.731 | 0.634 | 0.815 | 0.213 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11568
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
PLLKRRL,RKRESEEERARKRES,RKRESHEEGVRKRES,RKRESEEERARKREL,RKRELYEEGVRKRES,RKRESQEERARKRES,KKPAEPKQTFVKKPIR,RKRESQEERARKRECR,RRPFTPADGLPLEEYAKKR,SPHKKEGRIGGEEGKESPKRHRKGRTVRIRDYDERQRQRDEKRSEEGKHKQK
|
— | — | — | — |
1-31
|
0.684
|
0.639
|
0.000
|
0.000
|
0.153
|
0.042
|
0.016
|
0.366
|
0.232
|
0.212
|
0.185
|
0.020
|
0.743
|
0.184
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002332
|
1.000
|
3.000
|
Hsc_gene_1738.t1;Hsc_gene_1738.t2;Hsc_gene_1738.t3
|
— | — | — |
KAI1725895.1 low-density lipoprotein receptor domain class A domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR002172+49-85_49-86_56-82_61-82_128-162_128-168_129-163_132-163_141-162+|IPR036055+50-85_52-83_125-167_132-164+|IPR052317+421-1588+
|
SM00192+49-86_128-168+
|
PF00057+129-163+Low-density_lipoprotein_receptor_domain_class_A
|
— |
PTHR44665+421-1588+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;160-729;1059-1793
|
2.000
|
4-159;730-1058
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
198205.270
|
6.932
|
8.500
|
28.500
|
6.860
|
48.410
|
51.590
|
14.947
|
13.553
|
52.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1188.534
|
269.801
|
691.585
|
199.548
|
122.050
|
369.921
|
177.588
|
544.390
|
280.783
|
4098.670
|
2462.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.127
|
-0.572
|
-1.683
|
-0.742
|
1.615
|
-1.048
|
0.451
|
-1.472
|
-3.952
|
— |
-4.566
|
— | — |