Hg_chrom6_TN10mRNA_12278
Organism: Heterodera glycines Gene Locus: chr6:6123699-6127027 Feature type: polypeptideProtein Sequence
Length: 778
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 1.196 | 0.911 | 1.33 | 0.985 | 1.285 | 0.704 | 1.35 | 1.114 | 1.198 | 0.662 | 1.512 | 1.714 | 1.211 | 1.338 | 1.249 | 0.759 | 0.565 | 1.088 | 0.605 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11570
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRP,RRLKKLQNKNRRKPS,RKEFGDRTFTHDNEADKRR
|
65-85
|
1.000
|
49-97
|
0.987
|
— | — |
0.000
|
— | — |
0.107
|
0.054
|
0.052
|
0.215
|
0.140
|
0.205
|
0.246
|
0.037
|
0.201
|
0.715
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010616
|
1.000
|
1.000
|
Hsc_gene_1736.t1
|
— | — |
Q61EX6.2 Zinc metalloproteinase nas-36 [Caenorhabditis briggsae]
|
KAI1713688.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.802|GO:0005575_0.630|GO:0110165_0.630|GO:0032501_0.609|GO:0003674_0.545
|
IPR000742+492-503+|IPR000859+514-623_514-628_514-629+|IPR000884+667-717_670-717_671-716+|IPR001506+221-443_231-273_252-270_331-349_332-442_350-367_389-404_429-442+|IPR006026+227-394+|IPR024079+159-444+|IPR034035+235-441+|IPR035914+507-630_513-625+|IPR036383+642-719_665-716+
|
SM00042+514-629+|SM00209+670-717+|SM00235+227-394+
|
PF00090+671-716+Thrombospondin_type_1_domain|PF00431+514-623+CUB_domain|PF01400+231-273_332-442+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+150-568+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-778
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
88033.100
|
7.370
|
10.500
|
24.550
|
12.339
|
48.072
|
51.928
|
13.625
|
10.925
|
49.357
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.