Hg_chrom6_TN10mRNA_12279
Organism: Heterodera glycines Gene Locus: chr6:6127762-6128953 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.625 | 0.88 | 1.112 | 0.269 | 0.689 | 1.088 | 1.344 | 0.836 | 1.38 | 0.081 | 1.265 | 1.941 | 1.861 | 1.097 | 1.613 | 0.881 | 1.059 | 0.827 | 1.107 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11571
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — |
42-76
|
1.000
|
— | — |
0.000
|
— | — |
0.259
|
0.112
|
0.040
|
0.156
|
0.381
|
0.745
|
0.600
|
0.012
|
0.424
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010617
|
1.000
|
1.000
|
Hsc_gene_1735.t1
|
Hsc_gene_1735.t1
|
— | — |
KAI1717967.1 transmembrane protein [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.918|GO:0005622_0.772|GO:0005737_0.772|GO:0005829_0.558|GO:0048471_0.545
|
IPR008590+97-179+|IPR039714+68-181+
|
— |
PF05915+97-179+Transmembrane_proteins_230/134
|
— |
PTHR13558+68-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
20170.050
|
6.928
|
1.500
|
15.054
|
14.516
|
37.097
|
62.903
|
8.602
|
6.452
|
59.140
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
771.543
|
997.957
|
572.074
|
636.573
|
471.484
|
471.498
|
570.938
|
595.181
|
55.501
|
1715.486
|
1004.064
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.032
|
-0.786
|
0.263
|
-0.465
|
— |
0.286
|
— | — |
-5.099
|
— | — | — | — |
No JSON data available for plots.