Hg_chrom6_TN10mRNA_12280
Organism: Heterodera glycines Gene Locus: chr6:6130147-6131128 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.629 | 0.838 | 0.164 | 1.864 | 0.15 | 0.231 | 0.536 | 3.604 | 3.604 | 1.217 | 0.546 | 1.06 | 2.753 | 1.213 | 0.184 | 0.644 | 1.034 | 1.229 | 0.0 | 1.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11572
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
29-57
|
0.969
|
— | — |
0.000
|
— | — |
0.141
|
0.187
|
0.039
|
0.227
|
0.463
|
0.370
|
0.368
|
0.020
|
0.274
|
0.463
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001145
|
5.000
|
0.000
|
0.000
|
— | — |
P0CS18.1 Plasma membrane proteolipid 3 [Cryptococcus neoformans var. neoformans JEC21]
|
XP_020045717.1 cation transport-related protein [Ascoidea rubescens DSM 1968];ODV59410.1 cation transport-related protein [Ascoidea rubescens DSM 1968]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.649|GO:0005575_0.641|GO:0110165_0.633
|
IPR000612+57-110_61-109_66-81+
|
— |
PF01679+61-109+Proteolipid_membrane_potential_modulator
|
— |
PTHR21659+57-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
12524.150
|
8.263
|
7.000
|
13.514
|
21.622
|
28.829
|
71.171
|
11.712
|
1.802
|
45.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1656.880
|
7083.286
|
1137.292
|
893.692
|
1252.007
|
1748.378
|
998.274
|
1789.333
|
318.469
|
1421.652
|
948.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.868
|
-3.124
|
-0.239
|
0.454
|
0.496
|
-0.802
|
— |
-0.707
|
— | — | — | — | — |
No JSON data available for plots.