Hg_chrom6_TN10mRNA_12281
Organism: Heterodera glycines Gene Locus: chr6:6132024-6134122 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 0.984 | 0.85 | 1.536 | 1.039 | 1.085 | 0.61 | 0.78 | 1.336 | 1.354 | 0.844 | 2.096 | 1.423 | 0.814 | 1.591 | 1.145 | 0.84 | 0.81 | 0.685 | 0.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11573
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,KKPGFCEFEVSARRLCR
|
— | — |
51-89
|
0.968
|
— | — |
0.000
|
— | — |
0.892
|
0.154
|
0.014
|
0.418
|
0.026
|
0.021
|
0.022
|
0.007
|
0.061
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010618
|
1.000
|
1.000
|
Hsc_gene_1734.t1
|
Hsc_gene_1734.t1
|
— |
Q09528.2 Nuclear hormone receptor family member nhr-19 [Caenorhabditis elegans]
|
KAI1729670.1 ligand-binding domain of nuclear hormone receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.907|GO:0065007_0.826|GO:0009987_0.823|GO:0050789_0.819|GO:0005575_0.793|GO:0050794_0.774|GO:0110165_0.769|GO:0005622_0.722|GO:0003674_0.709|GO:0008152_0.706|GO:0043170_0.706|GO:0044237_0.705|GO:0009058_0.690|GO:0009059_0.686|GO:0044249_0.686|GO:0019222_0.682|GO:0031323_0.682|GO:0043226_0.681|GO:0060255_0.681|GO:0010467_0.676|GO:0044238_0.670|GO:0043229_0.667|GO:0009889_0.652|GO:0010556_0.652|GO:0031326_0.652|GO:0005488_0.648|GO:0010468_0.645|GO:0080090_0.628|GO:0006139_0.624|GO:0034654_0.622|GO:0090304_0.611|GO:0141187_0.610|GO:0016070_0.606|GO:0032774_0.606|GO:0019219_0.587|GO:0051252_0.581|GO:0006351_0.580|GO:2001141_0.576|GO:0006355_0.573|GO:0016020_0.569|GO:0097159_0.529|GO:0050896_0.515
|
IPR000536+180-441_212-425_221-412+|IPR001628+26-97_26-101_28-96_29-45_29-55_45-60_78-86_86-94+|IPR001723+90-100_222-243_243-259_330-345+|IPR013088+21-122+|IPR035500+183-440_212-434+|IPR049636+29-104+
|
SM00399+26-97+|SM00430+221-412+
|
PF00104+212-425+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+28-96+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR46587+24-439+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-449
|
1lat_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
51036.180
|
8.485
|
14.500
|
25.835
|
9.577
|
47.439
|
52.561
|
14.922
|
10.913
|
46.993
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
1064.246
|
1404.018
|
1539.475
|
947.146
|
1027.615
|
1336.610
|
1495.498
|
1980.578
|
596.957
|
559.257
|
575.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.705
|
-0.593
|
— |
0.394
|
0.171
|
0.462
|
— | — | — | — | — | — |
No JSON data available for plots.