Hg_chrom6_TN10mRNA_12282
Organism: Heterodera glycines Gene Locus: chr6:6134140-6136513 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.439 | 1.042 | 0.815 | 2.115 | 0.904 | 0.907 | 0.562 | 2.476 | 0.891 | 1.243 | 1.358 | 0.832 | 2.162 | 0.816 | 1.203 | 1.213 | 0.58 | 0.75 | 0.907 | 0.832 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11574
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKWFACSVFRSRKRCA,KKAHSVKKRKRQRNIRK,RKSDNQIIIKKTCKRERL
|
23-51
|
0.934
|
60-86
|
0.904
|
— | — |
0.000
|
— | — |
0.946
|
0.081
|
0.006
|
0.288
|
0.034
|
0.006
|
0.019
|
0.003
|
0.014
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010619
|
1.000
|
1.000
|
Hsc_gene_1733.t1
|
Hsc_gene_1733.t1
|
— | — |
KAI1729677.1 putative n6-adenine methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0008988|GO:0031167
|
GO:0008150_0.957|GO:0065007_0.908|GO:0005575_0.899|GO:0110165_0.899|GO:0009987_0.895|GO:0050789_0.895|GO:0003674_0.886|GO:0050794_0.881|GO:0005622_0.804|GO:0005488_0.800|GO:0008152_0.792|GO:0044238_0.791|GO:0043170_0.790|GO:0048518_0.785|GO:0016020_0.777|GO:0048522_0.773|GO:0044237_0.769|GO:0009058_0.767|GO:0019222_0.761|GO:0043226_0.758|GO:0009059_0.754|GO:0019538_0.754|GO:0044249_0.754|GO:0031323_0.747|GO:0071840_0.744|GO:0010467_0.739|GO:0060255_0.739|GO:0080090_0.737|GO:0043229_0.736|GO:0003824_0.728|GO:0009889_0.728|GO:0031326_0.726|GO:0043227_0.725|GO:0043412_0.725|GO:0006139_0.724|GO:0009893_0.723|GO:0010468_0.723|GO:0010556_0.723|GO:0005737_0.720|GO:0090304_0.717|GO:0010604_0.715|GO:0031325_0.715|GO:0034654_0.714|GO:0016070_0.712|GO:0141187_0.711|GO:0032774_0.708|GO:0043231_0.707|GO:0009891_0.704|GO:0031328_0.704|GO:0010557_0.702|GO:0016740_0.699|GO:0051246_0.695|GO:0010628_0.692|GO:0044085_0.685|GO:0051247_0.680|GO:0036094_0.677|GO:0006396_0.674|GO:0010608_0.674|GO:0043167_0.674|GO:0043169_0.671|GO:0000154_0.670|GO:0001510_0.670|GO:0006364_0.670|GO:0006412_0.670|GO:0006414_0.670|GO:0006417_0.670|GO:0009451_0.670|GO:0016072_0.670|GO:0022613_0.670|GO:0031167_0.670|GO:0032259_0.670|GO:0042254_0.670|GO:0043414_0.670|GO:0045727_0.670|GO:0046872_0.668|GO:0046914_0.662|GO:0008270_0.659|GO:0140640_0.657|GO:1901681_0.655|GO:0008168_0.654|GO:0008757_0.654|GO:0016741_0.654|GO:0140098_0.654|GO:0008170_0.650|GO:0008173_0.650|GO:0008649_0.650|GO:0008988_0.650|GO:0016433_0.650|GO:0140102_0.650|GO:1904047_0.650|GO:0005634_0.628|GO:0031974_0.589|GO:0043228_0.589|GO:0043233_0.589|GO:0070013_0.589|GO:0043232_0.587|GO:0031981_0.579|GO:0005730_0.546
|
IPR017921+359-420+|IPR037275+361-405+|IPR039846+44-420+|IPR041370+168-284+
|
— |
PF10237+168-284+Probable_N6-adenine_methyltransferase
|
— |
PTHR13493+44-420+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-424
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
49230.830
|
8.922
|
31.500
|
29.717
|
16.745
|
49.764
|
50.236
|
19.811
|
9.906
|
44.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
804.141
|
864.389
|
888.153
|
659.419
|
677.603
|
541.126
|
698.744
|
797.558
|
919.885
|
905.584
|
911.713
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.191
|
-0.528
|
-0.321
|
— |
-0.310
|
0.376
|
0.456
|
— | — | — | — | — | — |
No JSON data available for plots.