Hg_chrom6_TN10mRNA_12285
Organism: Heterodera glycines Gene Locus: chr6:6143131-6146550 Feature type: polypeptideProtein Sequence
Length: 673
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.486 | 0.973 | 0.307 | 0.867 | 0.952 | 0.69 | 1.263 | 1.321 | 1.265 | 0.405 | 1.573 | 1.403 | 0.714 | 1.607 | 0.573 | 0.974 | 1.373 | 2.057 | 1.53 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11577
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-18
|
0.997
|
1.000
|
0.000
|
0.000
|
0.096
|
0.067
|
0.014
|
0.140
|
0.195
|
0.309
|
0.247
|
0.115
|
0.908
|
0.304
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010621
|
1.000
|
1.000
|
Hsc_gene_1741.t1
|
Hsc_gene_1741.t1
|
— |
P10675.1 Fasciclin-1 [Schistocerca americana]
|
KAI1717966.1 fasciclin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.947|GO:0003674_0.884|GO:0009987_0.865|GO:0005575_0.853|GO:0110165_0.850|GO:0071944_0.759|GO:0005488_0.731|GO:0007155_0.677|GO:0016020_0.592|GO:0005886_0.548
|
IPR000782+174-337_215-340_341-485_354-485_380-488_489-634_523-635_531-637+|IPR036378+183-337_204-339_316-485_350-489_466-635_491-640+|IPR050904+340-519+
|
SM00554+215-340_380-488_531-637+
|
PF02469+354-485_523-635+Fasciclin_domain
|
G3DSA:2.30.180.10:FF:000058+197-339+Tyrosine-protein_kinase|G3DSA:2.30.180.10:FF:000060+490-640+Protein_CBG03800
|
PTHR10900+340-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-673
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
78347.670
|
7.583
|
8.500
|
23.626
|
15.453
|
43.685
|
56.315
|
13.076
|
10.550
|
47.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
450.444
|
310.493
|
179.893
|
205.951
|
135.692
|
411.464
|
589.249
|
695.078
|
103.531
|
945.110
|
584.433
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.016
|
-0.730
|
0.304
|
-0.633
|
1.615
|
0.529
|
0.656
|
— |
-3.272
|
— | — | — | — |