Hg_chrom6_TN10mRNA_12290
Organism: Heterodera glycines Gene Locus: chr6:6155339-6157701 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.677 | 1.172 | 0.645 | 1.005 | 0.906 | 0.52 | 1.559 | 1.34 | 1.32 | 0.914 | 1.957 | 2.252 | 0.76 | 1.57 | 1.099 | 0.613 | 0.945 | 0.0 | 0.428 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11582
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.426
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
22-42
|
0.999
|
1-29
|
0.985
|
— | — |
0.000
|
— | — |
0.200
|
0.830
|
0.255
|
0.141
|
0.023
|
0.049
|
0.047
|
0.037
|
0.117
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002333
|
1.000
|
3.000
|
Hsc_gene_1746.t1;Hsc_gene_1771.t1;Hsc_gene_1771.t2
|
Hsc_gene_1746.t1;Hsc_gene_1771.t1;Hsc_gene_1771.t2
|
— |
Q32PX9.1 AFG1-like ATPase [Rattus norvegicus]
|
KAH7710748.1 Protein C30F12.2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.889|GO:0110165_0.889|GO:0005622_0.829|GO:0005737_0.756|GO:0016020_0.744|GO:0043226_0.701|GO:0043229_0.679|GO:0008150_0.668|GO:0043227_0.656|GO:0043231_0.635|GO:0009987_0.610
|
IPR005654+51-477_68-420_69-423+|IPR027417+118-261_131-275+
|
— |
PF03969+68-420+AFG1-like_ATPase
|
— |
PTHR12169+51-477+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
473-481
|
1.000
|
1-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
54857.440
|
8.565
|
13.500
|
29.314
|
12.682
|
47.193
|
52.807
|
16.840
|
12.474
|
44.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
steelblue
|
900.640
|
817.996
|
1002.225
|
1050.436
|
907.950
|
840.288
|
764.571
|
1095.912
|
753.211
|
945.624
|
863.162
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.224
|
0.177
|
-0.242
|
— | — |
0.279
|
-0.378
|
— | — | — | — | — |
No JSON data available for plots.