SCN Proteipedia

Hg_chrom6_TN10mRNA_12293

Organism: Heterodera glycines Gene Locus: chr6:6165174-6168923 Feature type: polypeptide

Protein Sequence

Length: 407

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	1.143	1.296	0.847	1.147	0.819	0.761	1.843	0.764	1.361	0.633	2.023	1.433	0.851	1.454	0.878	0.765	0.707	1.323	0.867	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11585	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.781

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.459	0.404	0.089	0.627	0.102	0.223	0.094	0.026	0.227	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010627	1.000	1.000	Hsc_gene_1750.t2	Hsc_gene_1750.t1;Hsc_gene_1750.t2	—	P00516.2 cGMP-dependent protein kinase 1 [Bos taurus]	KAI1714535.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0004692\|GO:0005524\|GO:0006468	GO:0008150_0.950\|GO:0003674_0.897\|GO:0003824_0.897\|GO:0016740_0.897\|GO:0016772_0.894\|GO:0140096_0.894\|GO:0004672_0.893\|GO:0016301_0.893\|GO:0016773_0.893\|GO:0004674_0.865\|GO:0009987_0.861\|GO:0065007_0.821\|GO:0005575_0.818\|GO:0110165_0.818\|GO:0050789_0.815\|GO:0005622_0.764\|GO:0005488_0.748\|GO:0050794_0.746\|GO:0036094_0.670\|GO:0043167_0.670\|GO:0050896_0.655\|GO:0005737_0.645\|GO:0043168_0.635\|GO:0032501_0.633\|GO:0000166_0.630\|GO:0032502_0.630\|GO:0097159_0.630\|GO:1901265_0.630\|GO:1901363_0.630\|GO:0008152_0.617\|GO:0017076_0.615\|GO:0044237_0.610\|GO:0051716_0.609\|GO:0043170_0.606\|GO:0048856_0.606\|GO:0032553_0.605\|GO:0032555_0.605\|GO:0097367_0.605\|GO:0019538_0.587\|GO:0044238_0.587\|GO:0016020_0.585\|GO:0007154_0.577\|GO:0023052_0.575\|GO:0007165_0.569\|GO:0043412_0.554\|GO:0036211_0.551\|GO:0030551_0.549\|GO:0006793_0.547\|GO:0006796_0.547\|GO:0004690_0.545\|GO:0016043_0.545\|GO:0071840_0.545\|GO:0006468_0.525\|GO:0016310_0.525\|GO:0007275_0.506	IPR000719+98-355_100-355+\|IPR000961+356-407+\|IPR008271+217-229+\|IPR011009+95-392+\|IPR017441+104-127+\|IPR035014+104-359+	SM00220+98-355+	PF00069+100-355+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000571+91-369+Maternal_embryonic_leucine_zipper_kinase\|G3DSA:3.30.200.20:FF:000042+92-181+Aurora_kinase_A	PTHR24353+67-407+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-88	1.000	89-407	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.499	46473.560	6.113	-3.500	28.993	13.514	47.912	52.088	14.988	14.005	48.157

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	lightcyan	2623.985	3081.114	2396.154	1810.991	1752.309	3524.265	2682.583	5506.753	1009.135	2940.273	2112.642

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.593	-0.904	-0.295	—	1.023	-0.383	0.543	-0.896	—	—	—	—	—

No JSON data available for plots.

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