Hg_chrom6_TN10mRNA_12295
Organism: Heterodera glycines Gene Locus: chr6:6174193-6176566 Feature type: polypeptideProtein Sequence
Length: 357
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 0.782 | 0.611 | 0.386 | 2.101 | 2.514 | 0.9 | 1.681 | 1.432 | 1.022 | 0.594 | 1.977 | 1.012 | 0.377 | 2.172 | 0.76 | 0.735 | 0.806 | 0.862 | 0.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11585
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.781
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRSELDEEEEEKRERKGRN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.284
|
0.329
|
0.002
|
0.680
|
0.137
|
0.078
|
0.134
|
0.012
|
0.331
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004410
|
2.000
|
1.000
|
Hsc_gene_1750.t1
|
Hsc_gene_1750.t1
|
— |
Q03043.3 cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B [Drosophila melanogaster]
|
KAI1714536.1 cyclic nucleotide-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.913|GO:0110165_0.889|GO:0008150_0.872|GO:0005622_0.798|GO:0009987_0.797|GO:0065007_0.744|GO:0050789_0.729|GO:0003674_0.695|GO:0005488_0.695|GO:0050794_0.687|GO:0005737_0.674|GO:0016020_0.652|GO:0050896_0.565|GO:0032501_0.542|GO:0051716_0.515|GO:0032502_0.503|GO:0048856_0.503
|
IPR000595+155-253_155-268_174-253+|IPR014710+117-254+|IPR018488+218-235+|IPR018490+121-253+
|
SM00100+155-268+
|
PF00027+174-253+Cyclic_nucleotide-binding_domain
|
— |
PTHR24353+117-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-152;357-357
|
1.000
|
153-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
41580.850
|
6.642
|
1.000
|
33.894
|
8.683
|
56.863
|
43.137
|
17.927
|
15.966
|
36.975
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightcyan
|
2623.985
|
3081.114
|
2396.154
|
1810.991
|
1752.309
|
3524.265
|
2682.583
|
5506.753
|
1009.135
|
2940.273
|
2112.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.593
|
-0.904
|
-0.295
|
— |
1.023
|
-0.383
|
0.543
|
-0.896
|
— | — | — | — | — |
No JSON data available for plots.