Hg_chrom6_TN10mRNA_12297
Organism: Heterodera glycines Gene Locus: chr6:6182233-6183237 Feature type: polypeptideProtein Sequence
Length: 192
(Signal peptide: 1-43)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.787 | 1.575 | 0.473 | 0.359 | 0.434 | 3.472 | 1.55 | 0.781 | 0.579 | 0.633 | 0.395 | 0.919 | 1.157 | 1.102 | 1.276 | 1.488 | 0.683 | 0.237 | 2.404 | 1.532 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11587
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.519
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-43
|
0.519
|
0.729
|
0.000
|
0.000
|
0.839
|
0.132
|
0.010
|
0.546
|
0.106
|
0.038
|
0.076
|
0.016
|
0.033
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010629
|
1.000
|
1.000
|
Hsc_gene_1752.t1
|
— | — | — | — |
WP_291448211
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
64-192
|
1.000
|
1-63
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
21357.270
|
9.844
|
8.500
|
15.625
|
14.062
|
50.521
|
49.479
|
10.417
|
5.208
|
52.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
708.325
|
508.327
|
190.487
|
592.916
|
1901.009
|
2014.960
|
1019.548
|
929.082
|
13.432
|
405.226
|
237.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.645
|
— |
1.746
|
1.649
|
— |
-0.974
|
-1.214
|
— |
-5.056
|
5.671
|
— | — | — |