SCN Proteipedia

Hg_chrom6_TN10mRNA_12299

Organism: Heterodera glycines Gene Locus: chr6:6186607-6192488 Feature type: polypeptide

Protein Sequence

Length: 1,210

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.932	0.98	0.811	0.228	1.515	1.95	0.797	0.702	1.194	1.027	0.839	1.167	1.079	1.097	1.299	1.192	0.881	0.701	1.208	0.438	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11589	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.733

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RKEHERQELERRREA,KRKDNLDKGQAELERRRRI,RKDNLDKGQAELERRRRIL,ERRRRILREEEERRRAEIERREREEAERKEHERQELERRR	—	—	7-47	0.815	—	—	0.000	—	—	0.294	0.111	0.008	0.572	0.196	0.323	0.336	0.049	0.414	0.174

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010631	1.000	1.000	Hsc_gene_1754.t1	Hsc_gene_1754.t1;Hsc_gene_1754.t2	—	Q9Z0R4.2 Intersectin-1 [Mus musculus]	KAI1714547.1 SH3 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005515	GO:0005575_0.958\|GO:0110165_0.954\|GO:0008150_0.929\|GO:0009987_0.903\|GO:0005622_0.890\|GO:0016020_0.842\|GO:0043226_0.802\|GO:0043229_0.740\|GO:0065007_0.721\|GO:0043227_0.703\|GO:0050789_0.700\|GO:0005737_0.690\|GO:0050794_0.682\|GO:0071944_0.666\|GO:0071840_0.648\|GO:0016043_0.642\|GO:0005886_0.631\|GO:0003674_0.610\|GO:0005488_0.602\|GO:0005515_0.573\|GO:0043231_0.565\|GO:0051179_0.544	IPR000261+41-135_48-129_48-130_63-117_210-305_217-299_221-284_225-300+\|IPR001452+715-776_718-775_722-770_862-872_921-982_924-981_927-974_938-953_1013-1071_1016-1070_1019-1063_1083-1146_1086-1145_1088-1143_1117-1126_1132-1144_1148-1210_1151-1210_1154-1193+\|IPR002048+80-115_84-112_250-285_254-282+\|IPR011992+32-130_207-301+\|IPR018247+93-105_263-275+\|IPR036028+716-787_915-982_1014-1072_1086-1146_1151-1208+	SM00027+41-135_210-305+\|SM00054+84-112_254-282+\|SM00326+718-775_924-981_1016-1070_1086-1145_1151-1210+	PF00018+927-974_1019-1063_1154-1193+SH3_domain\|PF07653+1088-1143+Variant_SH3_domain\|PF12763+48-129_225-300+Cytoskeletal-regulatory_complex_EF_hand\|PF14604+722-770+Variant_SH3_domain	—	PTHR11216+9-130+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	137-181;297-546;619-672;781-914	5.000	1-136;182-296;547-618;673-780;915-1210	3fia_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.682	135255.660	5.566	-11.500	26.860	8.347	52.397	47.603	13.306	13.554	48.099

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2760.833	6833.175	3366.004	2302.132	1996.646	2427.599	3216.706	2737.123	2423.307	1681.397	1999.358

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.251	-1.707	-0.440	-0.237	0.297	0.416	—	0.375	—	—	—	—	—

No JSON data available for plots.

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