Hg_chrom6_TN10mRNA_12300
Organism: Heterodera glycines Gene Locus: chr6:6192854-6196962 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.403 | 1.403 | 1.097 | 0.297 | 1.509 | 1.437 | 0.924 | 1.293 | 0.862 | 1.223 | 0.457 | 1.775 | 1.437 | 0.58 | 1.583 | 0.739 | 0.707 | 0.718 | 0.0 | 0.254 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.834
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.434
|
0.189
|
0.004
|
0.540
|
0.244
|
0.086
|
0.152
|
0.014
|
0.120
|
0.154
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000900
|
1.000
|
5.000
|
Hsc_gene_24670.t1;Hsc_gene_24670.t2;Hsc_gene_24670.t3;Hsc_gene_24672.t1;Hsc_gene_24674.t1
|
— | — | — |
MDK2890861.1 proteasome regulatory subunit [Methanoculleus sp.]
|
RMI88701
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.810|GO:0110165_0.805|GO:0005622_0.733|GO:0008150_0.721|GO:0016020_0.700|GO:0005737_0.625|GO:0043226_0.622|GO:0043229_0.604|GO:0043227_0.562|GO:0009987_0.552|GO:0043231_0.545|GO:0008152_0.521|GO:0044238_0.503|GO:0003674_0.501
|
IPR027417+120-222_129-203+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-90
|
1.000
|
91-232
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
25590.560
|
4.905
|
-7.000
|
28.448
|
8.621
|
49.569
|
50.431
|
13.362
|
15.086
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
61.948
|
38.186
|
80.083
|
93.846
|
79.433
|
54.921
|
41.138
|
81.489
|
63.926
|
47.167
|
54.350
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
1.160
|
0.336
|
— |
-0.519
|
— | — |
-0.836
|
— | — | — | — | — |
No JSON data available for plots.