Hg_chrom6_TN10mRNA_12302
Organism: Heterodera glycines Gene Locus: chr6:6198113-6199184 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.995 | 0.875 | 0.738 | 1.426 | 1.508 | 0.509 | 1.337 | 1.188 | 1.951 | 0.891 | 0.629 | 0.743 | 0.617 | 1.419 | 0.535 | 1.052 | 0.81 | 1.234 | 0.472 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11592
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.837
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
2-26
|
0.964
|
— | — | — | — |
0.000
|
— | — |
0.569
|
0.401
|
0.004
|
0.588
|
0.210
|
0.211
|
0.113
|
0.295
|
0.074
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001365
|
3.000
|
2.000
|
Hsc_gene_18077.t1;Hsc_gene_18077.t2
|
— | — | — |
NIS61483.1 ATP-dependent zinc metalloprotease FtsH [Pseudomonadota bacterium]
|
MBG0783612
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0005575_0.802|GO:0110165_0.794|GO:0008150_0.718|GO:0016020_0.703|GO:0005622_0.658|GO:0005737_0.625|GO:0003674_0.515|GO:0043226_0.502
|
IPR000642+20-178+|IPR037219+20-183_20-186+
|
— |
PF01434+20-178+Peptidase_family_M41
|
— |
PTHR23076+20-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-187
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
21275.470
|
6.952
|
1.500
|
28.877
|
8.556
|
49.198
|
50.802
|
15.508
|
13.369
|
43.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
68.808
|
3.436
|
6.911
|
16.409
|
13.942
|
4.773
|
0.905
|
2.784
|
1.382
|
281.562
|
161.485
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.118
|
1.361
|
— |
-1.535
|
-2.406
|
— | — |
-7.904
|
3.896
|
-4.186
|
— | — |
No JSON data available for plots.